# HG changeset patch
# User iuc
# Date 1659988857 0
# Node ID 5ee29434330fa07dd66d0e214c72b293fd546062
# Parent  7ccea589e8b70d50b9bdf562f3071df7d9deed14
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit a96defec82bfa9628fa821ffa6df5c68314a41d8

diff -r 7ccea589e8b7 -r 5ee29434330f analyze.xml
--- a/analyze.xml	Fri Jul 29 20:31:27 2022 +0000
+++ b/analyze.xml	Mon Aug 08 20:00:57 2022 +0000
@@ -36,7 +36,7 @@
         <data name="bin_stats_analyze" format="tabular" from_work_dir="output/storage/bin_stats.analyze.tsv" label="${tool.name} on ${on_string}: Marker gene bin stats" />
         <data name="checkm_hmm_info" format="zip" from_work_dir="output/storage/checkm_hmm_info.pkl.gz" label="${tool.name} on ${on_string}: Marker gene HMM info for each bin" />
         <collection name="hmmer_analyze_ali" type="list" label="${tool.name} on ${on_string}: HMMER alignment file for each bin">
-            <filter>ali and 'hmmer_analyze_ali' in extra_outputs</filter>
+            <filter>ali and extra_outputs and 'hmmer_analyze_ali' in extra_outputs</filter>
             <discover_datasets pattern="(?P&lt;designation&gt;.*)/hmmer\.analyze\.ali\.txt" format="txt" directory="output/bins/" recurse="true" match_relative_path="true"/>
         </collection>
     </outputs>
diff -r 7ccea589e8b7 -r 5ee29434330f macros.xml
--- a/macros.xml	Fri Jul 29 20:31:27 2022 +0000
+++ b/macros.xml	Mon Aug 08 20:00:57 2022 +0000
@@ -119,7 +119,7 @@
             <filter>'alignment_file' in extra_outputs</filter>
         </data>-->
         <data name="marker_gene_stats" format="tabular" from_work_dir="output/storage/marker_gene_stats.tsv"  label="${tool.name} on ${on_string}: Marker gene statistics">
-            <filter>'marker_gene_stats' in extra_outputs</filter>
+            <filter>extra_outputs and 'marker_gene_stats' in extra_outputs</filter>
         </data>
     </xml>
     <xml name="rank_taxon">