Mercurial > repos > iuc > checkm_lineage_set
diff test-data/hmmer.tree.txt @ 0:b39999cdbf21 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
| author | iuc |
|---|---|
| date | Fri, 29 Jul 2022 20:38:36 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/hmmer.tree.txt Fri Jul 29 20:38:36 2022 +0000 @@ -0,0 +1,24 @@ +# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord +# target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target +#------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- +AC_000091_163 - 242 Ribosomal_S2 PF00318.15 211 1e-86 285.6 0.0 1 1 1.2e-89 1.1e-86 285.5 0.0 1 211 9 225 9 225 0.99 # 189874 # 190599 # 1 # ID=1_163;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 +AC_000091_24 - 939 TIGR00422 TIGR00422 863 1.4e-115 382.9 0.0 1 2 6.2e-40 2e-37 124.4 0.0 9 233 23 258 16 277 0.89 # 22391 # 25207 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 +AC_000091_24 - 939 TIGR00422 TIGR00422 863 1.4e-115 382.9 0.0 2 2 7.4e-80 2.4e-77 256.5 0.0 245 713 306 793 299 854 0.89 # 22391 # 25207 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 +AC_000091_631 - 861 TIGR00422 TIGR00422 863 1.7e-89 296.7 15.5 1 6 3.2e-43 1.1e-40 135.3 0.5 1 187 1 171 1 173 0.93 # 672623 # 675205 # -1 # ID=1_631;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.533 +AC_000091_631 - 861 TIGR00422 TIGR00422 863 1.7e-89 296.7 15.5 2 6 1.3e-07 4.1e-05 17.5 0.3 342 396 174 225 173 228 0.94 # 672623 # 675205 # -1 # ID=1_631;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.533 +AC_000091_631 - 861 TIGR00422 TIGR00422 863 1.7e-89 296.7 15.5 3 6 4.7e-05 0.015 9.0 0.1 199 230 232 261 227 270 0.86 # 672623 # 675205 # -1 # ID=1_631;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.533 +AC_000091_631 - 861 TIGR00422 TIGR00422 863 1.7e-89 296.7 15.5 4 6 5.6e-16 1.8e-13 45.1 0.0 244 330 308 408 305 416 0.88 # 672623 # 675205 # -1 # ID=1_631;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.533 +AC_000091_631 - 861 TIGR00422 TIGR00422 863 1.7e-89 296.7 15.5 5 6 9.5e-08 3.1e-05 17.9 0.1 397 520 416 570 410 593 0.63 # 672623 # 675205 # -1 # ID=1_631;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.533 +AC_000091_631 - 861 TIGR00422 TIGR00422 863 1.7e-89 296.7 15.5 6 6 4.2e-25 1.4e-22 75.3 0.0 525 737 618 810 605 832 0.78 # 672623 # 675205 # -1 # ID=1_631;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.533 +AC_000091_509 - 462 TIGR00422 TIGR00422 863 9.9e-10 32.8 0.2 1 2 0.00017 0.055 7.2 0.1 48 76 36 64 27 71 0.92 # 553834 # 555219 # 1 # ID=1_509;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.545 +AC_000091_509 - 462 TIGR00422 TIGR00422 863 9.9e-10 32.8 0.2 2 2 2.4e-09 7.7e-07 23.2 0.0 522 585 262 324 247 339 0.90 # 553834 # 555219 # 1 # ID=1_509;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.545 +# +# Program: hmmsearch +# Version: 3.3.2 (Nov 2020) +# Pipeline mode: SEARCH +# Query file: /tmp/tmpt_fl9whh/tmp/554e04fc-1374-442a-bd21-6a654ce3ad08 +# Target file: output/bins/637000110/genes.faa +# Option settings: hmmsearch --domtblout output/bins/637000110/hmmer.tree.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/tmpt_fl9whh/tmp/554e04fc-1374-442a-bd21-6a654ce3ad08 output/bins/637000110/genes.faa +# Current dir: /tmp/tmpt_fl9whh/job_working_directory/000/11/working +# Date: Thu Jul 28 12:37:11 2022 +# [ok]