Mercurial > repos > iuc > checkm_lineage_wf

annotate tool-data/order.loc.sample @ 2:8345d273ba82 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 3ae2bd72f789518e95ef65b97e0e5ac90165e113
author iuc
date Mon, 02 Sep 2024 13:50:15 +0000
parents 760dc0c0e689
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760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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1 # File generated by format_taxon_list.py script
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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2 # taxon description
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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3 Acholeplasmatales Acholeplasmatales (12 genomes, 176 marker genes, 88 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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4 Acidilobales Acidilobales (3 genomes, 558 marker genes, 236 marker sets)
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5 Acidithiobacillales Acidithiobacillales (6 genomes, 795 marker genes, 254 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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6 Acidobacteriales Acidobacteriales (10 genomes, 572 marker genes, 395 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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7 Aciduliprofundum Aciduliprofundum (2 genomes, 763 marker genes, 130 marker sets)
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8 Actinomycetales Actinomycetales (620 genomes, 256 marker genes, 152 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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9 Aeromonadales Aeromonadales (23 genomes, 456 marker genes, 237 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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10 Alteromonadales Alteromonadales (116 genomes, 519 marker genes, 267 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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11 Aquificales Aquificales (18 genomes, 486 marker genes, 369 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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12 Archaeoglobales Archaeoglobales (5 genomes, 619 marker genes, 392 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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13 Bacillales Bacillales (331 genomes, 319 marker genes, 134 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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14 Bacteroidales Bacteroidales (210 genomes, 402 marker genes, 267 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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15 Bacteroidetes Order II. Incertae sedis Bacteroidetes Order II. Incertae sedis (5 genomes, 801 marker genes, 466 marker sets)
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16 Bankia Bankia (2 genomes, 1388 marker genes, 332 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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17 Bdellovibrionales Bdellovibrionales (5 genomes, 466 marker genes, 290 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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18 Bifidobacteriales Bifidobacteriales (77 genomes, 464 marker genes, 220 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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19 Burkholderiales Burkholderiales (194 genomes, 427 marker genes, 216 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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20 Campylobacterales Campylobacterales (107 genomes, 458 marker genes, 273 marker sets)
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21 Cardiobacteriales Cardiobacteriales (3 genomes, 807 marker genes, 349 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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22 Caulobacterales Caulobacterales (15 genomes, 644 marker genes, 366 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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23 Chlamydiales Chlamydiales (64 genomes, 455 marker genes, 185 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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24 Chlorobiales Chlorobiales (12 genomes, 612 marker genes, 333 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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25 Chloroflexales Chloroflexales (8 genomes, 501 marker genes, 342 marker sets)
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26 Chromatiales Chromatiales (92 genomes, 595 marker genes, 283 marker sets)
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27 Chroococcales Chroococcales (55 genomes, 490 marker genes, 378 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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28 Clostridiales Clostridiales (395 genomes, 202 marker genes, 114 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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29 Coriobacteriales Coriobacteriales (23 genomes, 304 marker genes, 155 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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30 Cytophagales Cytophagales (48 genomes, 438 marker genes, 328 marker sets)
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31 Deferribacterales Deferribacterales (6 genomes, 564 marker genes, 339 marker sets)
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32 Dehalococcoidales Dehalococcoidales (5 genomes, 755 marker genes, 54 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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33 Deinococcales Deinococcales (17 genomes, 563 marker genes, 388 marker sets)
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34 Desulfobacterales Desulfobacterales (20 genomes, 320 marker genes, 189 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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35 Desulfovibrionales Desulfovibrionales (40 genomes, 454 marker genes, 252 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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36 Desulfurellales Desulfurellales (4 genomes, 817 marker genes, 252 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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37 Desulfurococcales Desulfurococcales (14 genomes, 287 marker genes, 213 marker sets)
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38 Desulfuromonadales Desulfuromonadales (13 genomes, 550 marker genes, 283 marker sets)
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39 Dictyoglomales Dictyoglomales (2 genomes, 1060 marker genes, 103 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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40 Enterobacteriales Enterobacteriales (262 genomes, 297 marker genes, 121 marker sets)
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41 Entomoplasmatales Entomoplasmatales (9 genomes, 362 marker genes, 151 marker sets)
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42 Erysipelotrichales Erysipelotrichales (18 genomes, 301 marker genes, 159 marker sets)
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43 Flavobacteriales Flavobacteriales (126 genomes, 321 marker genes, 202 marker sets)
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44 Fusobacteriales Fusobacteriales (32 genomes, 289 marker genes, 159 marker sets)
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45 Halanaerobiales Halanaerobiales (7 genomes, 504 marker genes, 189 marker sets)
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46 Halobacteriales Halobacteriales (59 genomes, 367 marker genes, 241 marker sets)
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47 Holophagales Holophagales (2 genomes, 883 marker genes, 459 marker sets)
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48 Hydrogenophilales Hydrogenophilales (3 genomes, 1205 marker genes, 209 marker sets)
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49 Ignavibacteriales Ignavibacteriales (2 genomes, 1003 marker genes, 383 marker sets)
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50 Lactobacillales Lactobacillales (490 genomes, 335 marker genes, 183 marker sets)
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51 Legionellales Legionellales (23 genomes, 545 marker genes, 269 marker sets)
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52 Mariprofundales Mariprofundales (2 genomes, 1329 marker genes, 184 marker sets)
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53 Methanobacteriales Methanobacteriales (12 genomes, 513 marker genes, 264 marker sets)
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54 Methanocellales Methanocellales (3 genomes, 712 marker genes, 317 marker sets)
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55 Methanococcales Methanococcales (16 genomes, 610 marker genes, 439 marker sets)
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56 Methanomicrobiales Methanomicrobiales (11 genomes, 465 marker genes, 230 marker sets)
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57 Methanosarcinales Methanosarcinales (14 genomes, 438 marker genes, 270 marker sets)
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58 Methylococcales Methylococcales (15 genomes, 684 marker genes, 348 marker sets)
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59 Methylophilales Methylophilales (16 genomes, 685 marker genes, 234 marker sets)
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60 Mycoplasmatales Mycoplasmatales (98 genomes, 217 marker genes, 127 marker sets)
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61 Myxococcales Myxococcales (8 genomes, 534 marker genes, 348 marker sets)
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62 Nautiliales Nautiliales (4 genomes, 712 marker genes, 351 marker sets)
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63 Neisseriales Neisseriales (69 genomes, 658 marker genes, 446 marker sets)
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64 Nitrosomonadales Nitrosomonadales (7 genomes, 851 marker genes, 314 marker sets)
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65 Nitrosopumilales Nitrosopumilales (2 genomes, 714 marker genes, 109 marker sets)
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66 Nitrospirales Nitrospirales (4 genomes, 676 marker genes, 379 marker sets)
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67 Nostocales Nostocales (18 genomes, 732 marker genes, 508 marker sets)
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68 Oceanospirillales Oceanospirillales (41 genomes, 497 marker genes, 229 marker sets)
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69 Opitutales Opitutales (3 genomes, 859 marker genes, 521 marker sets)
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70 Oscillatoriales Oscillatoriales (25 genomes, 545 marker genes, 415 marker sets)
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71 Pasteurellales Pasteurellales (83 genomes, 767 marker genes, 440 marker sets)
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72 Planctomycetales Planctomycetales (10 genomes, 370 marker genes, 265 marker sets)
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73 Pleurocapsales Pleurocapsales (6 genomes, 840 marker genes, 624 marker sets)
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74 Prochlorales Prochlorales (18 genomes, 806 marker genes, 240 marker sets)
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75 Pseudomonadales Pseudomonadales (274 genomes, 549 marker genes, 326 marker sets)
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76 Rhizobiales Rhizobiales (349 genomes, 407 marker genes, 244 marker sets)
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77 Rhodobacterales Rhodobacterales (104 genomes, 504 marker genes, 327 marker sets)
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78 Rhodocyclales Rhodocyclales (26 genomes, 625 marker genes, 264 marker sets)
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79 Rhodospirillales Rhodospirillales (57 genomes, 367 marker genes, 228 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
iuc
parents:
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80 Rickettsiales Rickettsiales (81 genomes, 325 marker genes, 210 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
iuc
parents:
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81 Rubrobacterales Rubrobacterales (2 genomes, 991 marker genes, 269 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
iuc
parents:
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82 Selenomonadales Selenomonadales (64 genomes, 334 marker genes, 167 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
iuc
parents:
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83 Solirubrobacterales Solirubrobacterales (4 genomes, 721 marker genes, 307 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
iuc
parents:
diff changeset
84 Sphingobacteriales Sphingobacteriales (27 genomes, 334 marker genes, 233 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
iuc
parents:
diff changeset
85 Sphingomonadales Sphingomonadales (31 genomes, 490 marker genes, 270 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
iuc
parents:
diff changeset
86 Spirochaetales Spirochaetales (71 genomes, 218 marker genes, 127 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
iuc
parents:
diff changeset
87 Stigonematales Stigonematales (5 genomes, 1007 marker genes, 576 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
iuc
parents:
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88 Sulfolobales Sulfolobales (20 genomes, 499 marker genes, 141 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
iuc
parents:
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89 Synergistales Synergistales (13 genomes, 452 marker genes, 160 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
iuc
parents:
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90 Thermales Thermales (23 genomes, 585 marker genes, 331 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
iuc
parents:
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91 Thermoanaerobacterales Thermoanaerobacterales (44 genomes, 308 marker genes, 158 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
iuc
parents:
diff changeset
92 Thermococcales Thermococcales (16 genomes, 500 marker genes, 315 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
iuc
parents:
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93 Thermodesulfobacteriales Thermodesulfobacteriales (5 genomes, 813 marker genes, 440 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
iuc
parents:
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94 Thermoplasmatales Thermoplasmatales (4 genomes, 563 marker genes, 310 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
iuc
parents:
diff changeset
95 Thermoproteales Thermoproteales (13 genomes, 315 marker genes, 257 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
iuc
parents:
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96 Thermotogales Thermotogales (14 genomes, 460 marker genes, 267 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
iuc
parents:
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97 Thiotrichales Thiotrichales (64 genomes, 406 marker genes, 251 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
iuc
parents:
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98 Verrucomicrobiales Verrucomicrobiales (7 genomes, 403 marker genes, 284 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
iuc
parents:
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99 Vibrionales Vibrionales (80 genomes, 922 marker genes, 367 marker sets)
760dc0c0e689 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
iuc
parents:
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100 Xanthomonadales Xanthomonadales (63 genomes, 499 marker genes, 264 marker sets)