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comparison tetra.xml @ 0:878d742dacf0 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
author iuc
date Fri, 29 Jul 2022 20:34:20 +0000
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-1:000000000000 0:878d742dacf0
1 <tool id="checkm_tetra" name="CheckM tetra" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <description>
3 Calculate tetranucleotide signature of sequences
4 </description>
5 <macros>
6 <import>macros.xml</import>
7 </macros>
8 <expand macro="biotools"/>
9 <expand macro="requirements"/>
10 <expand macro="version"/>
11 <command detect_errors="exit_code"><![CDATA[
12 checkm tetra
13 '$seq_file'
14 '$tetra_profile'
15 --threads \${GALAXY_SLOTS:-1}
16 ]]></command>
17 <inputs>
18 <param name="seq_file" type="data" format="fasta" label="Sequences used to generate bins"/>
19 </inputs>
20 <outputs>
21 <data name="tetra_profile" format="tabular"/>
22 </outputs>
23 <tests>
24 <test expect_num_outputs="1">
25 <param name="seq_file" value="637000110.fna"/>
26 <output name="tetra_profile" ftype="tabular">
27 <assert_contents>
28 <has_text text="AC_000091"/>
29 <has_text text="Sequence Id"/>
30 <has_text text="GGGA"/>
31 </assert_contents>
32 </output>
33 </test>
34 </tests>
35 <help><![CDATA[
36 @HELP_HEADER@
37
38 This command generates taxonomic-specific marker set
39
40 Inputs
41 ======
42
43
44 Outputs
45 =======
46
47
48 ]]></help>
49 <expand macro="citations"/>
50 </tool>