Mercurial > repos > iuc > checkm_tree
diff tool-data/family.loc.sample @ 0:9b2790bca5b5 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
| author | iuc |
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| date | Fri, 29 Jul 2022 20:29:27 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/family.loc.sample Fri Jul 29 20:29:27 2022 +0000 @@ -0,0 +1,233 @@ +# File generated by format_taxon_list.py script +# taxon description +Acetobacteraceae Acetobacteraceae (30 genomes, 473 marker genes, 264 marker sets) +Acholeplasmataceae Acholeplasmataceae (12 genomes, 176 marker genes, 88 marker sets) +Acidaminococcaceae Acidaminococcaceae (7 genomes, 677 marker genes, 256 marker sets) +Acidilobaceae Acidilobaceae (2 genomes, 645 marker genes, 144 marker sets) +Acidithiobacillaceae Acidithiobacillaceae (5 genomes, 907 marker genes, 200 marker sets) +Acidobacteriaceae Acidobacteriaceae (9 genomes, 575 marker genes, 396 marker sets) +Aciduliprofundum Aciduliprofundum (2 genomes, 763 marker genes, 130 marker sets) +Actinomycetaceae Actinomycetaceae (42 genomes, 420 marker genes, 211 marker sets) +Actinopolysporaceae Actinopolysporaceae (3 genomes, 872 marker genes, 433 marker sets) +Aerococcaceae Aerococcaceae (10 genomes, 424 marker genes, 195 marker sets) +Aeromonadaceae Aeromonadaceae (17 genomes, 841 marker genes, 368 marker sets) +Alcaligenaceae Alcaligenaceae (27 genomes, 486 marker genes, 218 marker sets) +Alcanivoracaceae Alcanivoracaceae (8 genomes, 877 marker genes, 350 marker sets) +Alicyclobacillaceae Alicyclobacillaceae (9 genomes, 608 marker genes, 229 marker sets) +Alteromonadaceae Alteromonadaceae (38 genomes, 590 marker genes, 296 marker sets) +Anaplasmataceae Anaplasmataceae (18 genomes, 319 marker genes, 212 marker sets) +Aquificaceae Aquificaceae (10 genomes, 656 marker genes, 475 marker sets) +Archaeoglobaceae Archaeoglobaceae (5 genomes, 619 marker genes, 392 marker sets) +Arthrospira Arthrospira (2 genomes, 1432 marker genes, 419 marker sets) +Aurantimonadaceae Aurantimonadaceae (4 genomes, 883 marker genes, 434 marker sets) +Bacillaceae Bacillaceae (162 genomes, 418 marker genes, 155 marker sets) +Bacteroidaceae Bacteroidaceae (96 genomes, 524 marker genes, 282 marker sets) +Bankia Bankia (2 genomes, 1388 marker genes, 332 marker sets) +Bartonellaceae Bartonellaceae (29 genomes, 708 marker genes, 188 marker sets) +Bdellovibrionaceae Bdellovibrionaceae (4 genomes, 561 marker genes, 331 marker sets) +Beijerinckiaceae Beijerinckiaceae (4 genomes, 1024 marker genes, 488 marker sets) +Bifidobacteriaceae Bifidobacteriaceae (77 genomes, 464 marker genes, 220 marker sets) +Blattabacteriaceae Blattabacteriaceae (6 genomes, 547 marker genes, 16 marker sets) +Brachyspiraceae Brachyspiraceae (10 genomes, 783 marker genes, 458 marker sets) +Bradyrhizobiaceae Bradyrhizobiaceae (52 genomes, 619 marker genes, 276 marker sets) +Brevibacteriaceae Brevibacteriaceae (3 genomes, 833 marker genes, 259 marker sets) +Brucellaceae Brucellaceae (94 genomes, 1206 marker genes, 241 marker sets) +Burkholderiaceae Burkholderiaceae (94 genomes, 568 marker genes, 224 marker sets) +Campylobacteraceae Campylobacteraceae (66 genomes, 505 marker genes, 274 marker sets) +Cardiobacteriaceae Cardiobacteriaceae (3 genomes, 807 marker genes, 349 marker sets) +Carnobacteriaceae Carnobacteriaceae (7 genomes, 469 marker genes, 197 marker sets) +Caulobacteraceae Caulobacteraceae (15 genomes, 644 marker genes, 366 marker sets) +Cellulomonadaceae Cellulomonadaceae (7 genomes, 766 marker genes, 260 marker sets) +Chitinophagaceae Chitinophagaceae (8 genomes, 634 marker genes, 396 marker sets) +Chlamydiaceae Chlamydiaceae (59 genomes, 590 marker genes, 92 marker sets) +Chlorobiaceae Chlorobiaceae (12 genomes, 612 marker genes, 333 marker sets) +Chloroflexaceae Chloroflexaceae (7 genomes, 570 marker genes, 386 marker sets) +Chromatiaceae Chromatiaceae (14 genomes, 545 marker genes, 300 marker sets) +Chroococcidiopsis Chroococcidiopsis (2 genomes, 1159 marker genes, 811 marker sets) +Clostridiaceae Clostridiaceae (10 genomes, 387 marker genes, 178 marker sets) +Clostridiales Family XI. Incertae Sedis Clostridiales Family XI. Incertae Sedis (20 genomes, 345 marker genes, 186 marker sets) +Clostridiales Family XVII. Incertae Sedis Clostridiales Family XVII. Incertae Sedis (5 genomes, 682 marker genes, 263 marker sets) +Colwelliaceae Colwelliaceae (3 genomes, 1371 marker genes, 293 marker sets) +Comamonadaceae Comamonadaceae (41 genomes, 669 marker genes, 297 marker sets) +Conexibacteraceae Conexibacteraceae (2 genomes, 1064 marker genes, 347 marker sets) +Coriobacteriaceae Coriobacteriaceae (23 genomes, 304 marker genes, 155 marker sets) +Corynebacteriaceae Corynebacteriaceae (80 genomes, 585 marker genes, 243 marker sets) +Coxiellaceae Coxiellaceae (5 genomes, 1047 marker genes, 146 marker sets) +Cryomorphaceae Cryomorphaceae (3 genomes, 782 marker genes, 490 marker sets) +Cyanobacterium Cyanobacterium (4 genomes, 650 marker genes, 477 marker sets) +Cyanobium Cyanobium (2 genomes, 1225 marker genes, 277 marker sets) +Cyanothece Cyanothece (8 genomes, 865 marker genes, 653 marker sets) +Cyclobacteriaceae Cyclobacteriaceae (13 genomes, 720 marker genes, 342 marker sets) +Cytophagaceae Cytophagaceae (30 genomes, 383 marker genes, 278 marker sets) +Deferribacteraceae Deferribacteraceae (5 genomes, 768 marker genes, 300 marker sets) +Dehalococcoidaceae Dehalococcoidaceae (5 genomes, 755 marker genes, 54 marker sets) +Deinococcaceae Deinococcaceae (16 genomes, 630 marker genes, 426 marker sets) +Dermabacteraceae Dermabacteraceae (2 genomes, 876 marker genes, 242 marker sets) +Dermacoccaceae Dermacoccaceae (3 genomes, 776 marker genes, 316 marker sets) +Dermatophilaceae Dermatophilaceae (3 genomes, 866 marker genes, 346 marker sets) +Desulfobacteraceae Desulfobacteraceae (14 genomes, 394 marker genes, 216 marker sets) +Desulfobulbaceae Desulfobulbaceae (6 genomes, 626 marker genes, 290 marker sets) +Desulfohalobiaceae Desulfohalobiaceae (3 genomes, 774 marker genes, 358 marker sets) +Desulfomicrobiaceae Desulfomicrobiaceae (2 genomes, 1255 marker genes, 271 marker sets) +Desulfovibrionaceae Desulfovibrionaceae (34 genomes, 497 marker genes, 270 marker sets) +Desulfurellaceae Desulfurellaceae (4 genomes, 817 marker genes, 252 marker sets) +Desulfurobacteriaceae Desulfurobacteriaceae (2 genomes, 965 marker genes, 410 marker sets) +Desulfurococcaceae Desulfurococcaceae (12 genomes, 310 marker genes, 223 marker sets) +Dictyoglomaceae Dictyoglomaceae (2 genomes, 1060 marker genes, 103 marker sets) +Ectothiorhodospiraceae Ectothiorhodospiraceae (77 genomes, 837 marker genes, 294 marker sets) +Enterobacteriaceae Enterobacteriaceae (262 genomes, 297 marker genes, 121 marker sets) +Enterococcaceae Enterococcaceae (55 genomes, 542 marker genes, 226 marker sets) +Entomoplasmataceae Entomoplasmataceae (8 genomes, 383 marker genes, 120 marker sets) +Erysipelotrichaceae Erysipelotrichaceae (18 genomes, 301 marker genes, 159 marker sets) +Erythrobacteraceae Erythrobacteraceae (4 genomes, 1071 marker genes, 266 marker sets) +Eubacteriaceae Eubacteriaceae (22 genomes, 221 marker genes, 140 marker sets) +Exiguobacterium Exiguobacterium (11 genomes, 1039 marker genes, 263 marker sets) +Fangia Fangia (2 genomes, 1383 marker genes, 144 marker sets) +Ferrimonadaceae Ferrimonadaceae (4 genomes, 1311 marker genes, 393 marker sets) +Fischerella Fischerella (4 genomes, 1081 marker genes, 585 marker sets) +Flammeovirgaceae Flammeovirgaceae (5 genomes, 626 marker genes, 437 marker sets) +Flavobacteriaceae Flavobacteriaceae (115 genomes, 457 marker genes, 309 marker sets) +Francisellaceae Francisellaceae (40 genomes, 787 marker genes, 238 marker sets) +Frankiaceae Frankiaceae (12 genomes, 569 marker genes, 282 marker sets) +Fusobacteriaceae Fusobacteriaceae (23 genomes, 431 marker genes, 189 marker sets) +Gemella Gemella (5 genomes, 787 marker genes, 169 marker sets) +Geobacteraceae Geobacteraceae (11 genomes, 631 marker genes, 310 marker sets) +Geodermatophilaceae Geodermatophilaceae (5 genomes, 878 marker genes, 296 marker sets) +Gloeocapsa Gloeocapsa (2 genomes, 1115 marker genes, 740 marker sets) +Glycomycetaceae Glycomycetaceae (4 genomes, 840 marker genes, 375 marker sets) +Gordoniaceae Gordoniaceae (26 genomes, 670 marker genes, 298 marker sets) +Hahellaceae Hahellaceae (3 genomes, 1080 marker genes, 468 marker sets) +Halanaerobiaceae Halanaerobiaceae (3 genomes, 702 marker genes, 192 marker sets) +Halobacteriaceae Halobacteriaceae (58 genomes, 371 marker genes, 244 marker sets) +Halobacteroidaceae Halobacteroidaceae (4 genomes, 788 marker genes, 219 marker sets) +Halomonadaceae Halomonadaceae (15 genomes, 684 marker genes, 246 marker sets) +Helicobacteraceae Helicobacteraceae (41 genomes, 498 marker genes, 302 marker sets) +Holophagaceae Holophagaceae (2 genomes, 883 marker genes, 459 marker sets) +Hydrogenophilaceae Hydrogenophilaceae (3 genomes, 1205 marker genes, 209 marker sets) +Hydrogenothermaceae Hydrogenothermaceae (6 genomes, 840 marker genes, 402 marker sets) +Hyphomicrobiaceae Hyphomicrobiaceae (12 genomes, 551 marker genes, 325 marker sets) +Hyphomonadaceae Hyphomonadaceae (10 genomes, 761 marker genes, 398 marker sets) +Idiomarinaceae Idiomarinaceae (5 genomes, 1057 marker genes, 247 marker sets) +Intrasporangiaceae Intrasporangiaceae (8 genomes, 651 marker genes, 328 marker sets) +Jonesiaceae Jonesiaceae (2 genomes, 1211 marker genes, 191 marker sets) +Lachnospiraceae Lachnospiraceae (86 genomes, 312 marker genes, 160 marker sets) +Lactobacillaceae Lactobacillaceae (143 genomes, 396 marker genes, 153 marker sets) +Legionellaceae Legionellaceae (18 genomes, 695 marker genes, 290 marker sets) +Leptolyngbya Leptolyngbya (3 genomes, 917 marker genes, 660 marker sets) +Leptospiraceae Leptospiraceae (5 genomes, 902 marker genes, 533 marker sets) +Leptotrichiaceae Leptotrichiaceae (9 genomes, 467 marker genes, 239 marker sets) +Leuconostocaceae Leuconostocaceae (35 genomes, 463 marker genes, 209 marker sets) +Listeriaceae Listeriaceae (25 genomes, 873 marker genes, 158 marker sets) +Lyngbya Lyngbya (2 genomes, 1111 marker genes, 753 marker sets) +Mariprofundaceae Mariprofundaceae (2 genomes, 1329 marker genes, 184 marker sets) +Methanobacteriaceae Methanobacteriaceae (11 genomes, 543 marker genes, 255 marker sets) +Methanocaldococcaceae Methanocaldococcaceae (7 genomes, 743 marker genes, 524 marker sets) +Methanocellaceae Methanocellaceae (3 genomes, 712 marker genes, 317 marker sets) +Methanococcaceae Methanococcaceae (9 genomes, 669 marker genes, 370 marker sets) +Methanocorpusculaceae Methanocorpusculaceae (2 genomes, 889 marker genes, 135 marker sets) +Methanomicrobiaceae Methanomicrobiaceae (4 genomes, 645 marker genes, 231 marker sets) +Methanoregulaceae Methanoregulaceae (4 genomes, 620 marker genes, 220 marker sets) +Methanosaetaceae Methanosaetaceae (3 genomes, 700 marker genes, 354 marker sets) +Methanosarcinaceae Methanosarcinaceae (10 genomes, 579 marker genes, 256 marker sets) +Methylobacteriaceae Methylobacteriaceae (20 genomes, 455 marker genes, 308 marker sets) +Methylococcaceae Methylococcaceae (15 genomes, 684 marker genes, 348 marker sets) +Methylocystaceae Methylocystaceae (11 genomes, 610 marker genes, 373 marker sets) +Methylophilaceae Methylophilaceae (14 genomes, 873 marker genes, 269 marker sets) +Microbacteriaceae Microbacteriaceae (30 genomes, 416 marker genes, 190 marker sets) +Microchaetaceae Microchaetaceae (2 genomes, 1208 marker genes, 646 marker sets) +Micrococcaceae Micrococcaceae (38 genomes, 459 marker genes, 217 marker sets) +Microcoleus Microcoleus (2 genomes, 1191 marker genes, 754 marker sets) +Micromonosporaceae Micromonosporaceae (55 genomes, 713 marker genes, 273 marker sets) +Moraxellaceae Moraxellaceae (86 genomes, 689 marker genes, 365 marker sets) +Mycobacteriaceae Mycobacteriaceae (101 genomes, 682 marker genes, 290 marker sets) +Mycoplasmataceae Mycoplasmataceae (98 genomes, 217 marker genes, 127 marker sets) +Myxococcaceae Myxococcaceae (6 genomes, 707 marker genes, 364 marker sets) +Nakamurellaceae Nakamurellaceae (2 genomes, 1011 marker genes, 427 marker sets) +Nautiliaceae Nautiliaceae (4 genomes, 712 marker genes, 351 marker sets) +Neisseriaceae Neisseriaceae (69 genomes, 658 marker genes, 446 marker sets) +Nitrosomonadaceae Nitrosomonadaceae (7 genomes, 851 marker genes, 314 marker sets) +Nitrosopumilaceae Nitrosopumilaceae (2 genomes, 714 marker genes, 109 marker sets) +Nitrospiraceae Nitrospiraceae (4 genomes, 676 marker genes, 379 marker sets) +Nocardiaceae Nocardiaceae (21 genomes, 559 marker genes, 269 marker sets) +Nocardioidaceae Nocardioidaceae (11 genomes, 470 marker genes, 262 marker sets) +Nocardiopsaceae Nocardiopsaceae (7 genomes, 826 marker genes, 316 marker sets) +Nostocaceae Nostocaceae (13 genomes, 800 marker genes, 536 marker sets) +Oceanospirillaceae Oceanospirillaceae (14 genomes, 636 marker genes, 305 marker sets) +Opitutaceae Opitutaceae (3 genomes, 859 marker genes, 521 marker sets) +Oscillatoria Oscillatoria (3 genomes, 1076 marker genes, 673 marker sets) +Oxalobacteraceae Oxalobacteraceae (16 genomes, 580 marker genes, 265 marker sets) +Paenibacillaceae Paenibacillaceae (44 genomes, 492 marker genes, 188 marker sets) +Parachlamydiaceae Parachlamydiaceae (3 genomes, 775 marker genes, 331 marker sets) +Pasteurellaceae Pasteurellaceae (83 genomes, 767 marker genes, 440 marker sets) +Patulibacteraceae Patulibacteraceae (2 genomes, 1012 marker genes, 347 marker sets) +Pelagibacteraceae Pelagibacteraceae (15 genomes, 695 marker genes, 142 marker sets) +Pelobacteraceae Pelobacteraceae (2 genomes, 958 marker genes, 487 marker sets) +Peptococcaceae Peptococcaceae (23 genomes, 391 marker genes, 153 marker sets) +Peptostreptococcaceae Peptostreptococcaceae (184 genomes, 287 marker genes, 151 marker sets) +Phyllobacteriaceae Phyllobacteriaceae (26 genomes, 598 marker genes, 258 marker sets) +Piscirickettsiaceae Piscirickettsiaceae (16 genomes, 638 marker genes, 292 marker sets) +Planctomycetaceae Planctomycetaceae (10 genomes, 370 marker genes, 265 marker sets) +Planktothrix Planktothrix (6 genomes, 1307 marker genes, 425 marker sets) +Planococcaceae Planococcaceae (6 genomes, 823 marker genes, 233 marker sets) +Pleurocapsa Pleurocapsa (2 genomes, 1138 marker genes, 783 marker sets) +Porphyromonadaceae Porphyromonadaceae (37 genomes, 455 marker genes, 310 marker sets) +Prevotellaceae Prevotellaceae (69 genomes, 553 marker genes, 298 marker sets) +Prochlorococcaceae Prochlorococcaceae (18 genomes, 806 marker genes, 240 marker sets) +Promicromonosporaceae Promicromonosporaceae (6 genomes, 783 marker genes, 376 marker sets) +Propionibacteriaceae Propionibacteriaceae (40 genomes, 532 marker genes, 294 marker sets) +Pseudanabaena Pseudanabaena (2 genomes, 1172 marker genes, 781 marker sets) +Pseudoalteromonadaceae Pseudoalteromonadaceae (21 genomes, 782 marker genes, 307 marker sets) +Pseudomonadaceae Pseudomonadaceae (186 genomes, 800 marker genes, 302 marker sets) +Pseudonocardiaceae Pseudonocardiaceae (32 genomes, 364 marker genes, 201 marker sets) +Psychromonadaceae Psychromonadaceae (5 genomes, 1062 marker genes, 326 marker sets) +Pyrodictiaceae Pyrodictiaceae (2 genomes, 609 marker genes, 346 marker sets) +Rhizobiaceae Rhizobiaceae (85 genomes, 515 marker genes, 225 marker sets) +Rhodobacteraceae Rhodobacteraceae (91 genomes, 528 marker genes, 341 marker sets) +Rhodobiaceae Rhodobiaceae (2 genomes, 1121 marker genes, 424 marker sets) +Rhodocyclaceae Rhodocyclaceae (25 genomes, 641 marker genes, 269 marker sets) +Rhodospirillaceae Rhodospirillaceae (26 genomes, 300 marker genes, 163 marker sets) +Rhodothermaceae Rhodothermaceae (5 genomes, 801 marker genes, 466 marker sets) +Rickettsiaceae Rickettsiaceae (46 genomes, 528 marker genes, 196 marker sets) +Rikenellaceae Rikenellaceae (6 genomes, 648 marker genes, 386 marker sets) +Rivulariaceae Rivulariaceae (3 genomes, 1070 marker genes, 642 marker sets) +Rubrivivax Rubrivivax (3 genomes, 1586 marker genes, 343 marker sets) +Rubrobacteraceae Rubrobacteraceae (2 genomes, 991 marker genes, 269 marker sets) +Ruminococcaceae Ruminococcaceae (20 genomes, 284 marker genes, 161 marker sets) +Saprospiraceae Saprospiraceae (5 genomes, 671 marker genes, 479 marker sets) +Shewanellaceae Shewanellaceae (26 genomes, 989 marker genes, 339 marker sets) +Sinobacteraceae Sinobacteraceae (4 genomes, 1083 marker genes, 398 marker sets) +Solirubrobacteraceae Solirubrobacteraceae (2 genomes, 995 marker genes, 398 marker sets) +Sphingobacteriaceae Sphingobacteriaceae (11 genomes, 575 marker genes, 344 marker sets) +Sphingomonadaceae Sphingomonadaceae (27 genomes, 501 marker genes, 275 marker sets) +Spirochaetaceae Spirochaetaceae (56 genomes, 235 marker genes, 124 marker sets) +Sporolactobacillaceae Sporolactobacillaceae (2 genomes, 1066 marker genes, 320 marker sets) +Staphylococcaceae Staphylococcaceae (64 genomes, 642 marker genes, 181 marker sets) +Streptococcaceae Streptococcaceae (240 genomes, 524 marker genes, 282 marker sets) +Streptomycetaceae Streptomycetaceae (58 genomes, 506 marker genes, 264 marker sets) +Streptosporangiaceae Streptosporangiaceae (2 genomes, 1116 marker genes, 473 marker sets) +Succinivibrionaceae Succinivibrionaceae (6 genomes, 637 marker genes, 317 marker sets) +Sulfolobaceae Sulfolobaceae (19 genomes, 526 marker genes, 149 marker sets) +Sutterellaceae Sutterellaceae (4 genomes, 792 marker genes, 261 marker sets) +Synechococcus Synechococcus (25 genomes, 554 marker genes, 425 marker sets) +Synechocystis Synechocystis (5 genomes, 1099 marker genes, 794 marker sets) +Synergistaceae Synergistaceae (13 genomes, 452 marker genes, 160 marker sets) +Syntrophomonadaceae Syntrophomonadaceae (3 genomes, 744 marker genes, 271 marker sets) +Teredinibacter Teredinibacter (10 genomes, 1162 marker genes, 360 marker sets) +Thermaceae Thermaceae (23 genomes, 585 marker genes, 331 marker sets) +Thermoactinomycetaceae Thermoactinomycetaceae (2 genomes, 1027 marker genes, 387 marker sets) +Thermoanaerobacteraceae Thermoanaerobacteraceae (24 genomes, 438 marker genes, 193 marker sets) +Thermoanaerobacterales Family III. Incertae Sedis Thermoanaerobacterales Family III. Incertae Sedis (16 genomes, 599 marker genes, 251 marker sets) +Thermococcaceae Thermococcaceae (16 genomes, 500 marker genes, 315 marker sets) +Thermodesulfobacteriaceae Thermodesulfobacteriaceae (5 genomes, 813 marker genes, 440 marker sets) +Thermodesulfobiaceae Thermodesulfobiaceae (3 genomes, 538 marker genes, 284 marker sets) +Thermomonosporaceae Thermomonosporaceae (4 genomes, 839 marker genes, 346 marker sets) +Thermoplasmataceae Thermoplasmataceae (2 genomes, 733 marker genes, 167 marker sets) +Thermoproteaceae Thermoproteaceae (12 genomes, 410 marker genes, 333 marker sets) +Thermotogaceae Thermotogaceae (14 genomes, 460 marker genes, 267 marker sets) +Thiomonas Thiomonas (3 genomes, 1202 marker genes, 366 marker sets) +Thiotrichaceae Thiotrichaceae (6 genomes, 764 marker genes, 473 marker sets) +Veillonellaceae Veillonellaceae (57 genomes, 345 marker genes, 171 marker sets) +Verrucomicrobiaceae Verrucomicrobiaceae (5 genomes, 505 marker genes, 342 marker sets) +Vibrionaceae Vibrionaceae (80 genomes, 922 marker genes, 367 marker sets) +Xanthobacteraceae Xanthobacteraceae (9 genomes, 824 marker genes, 433 marker sets) +Xanthomonadaceae Xanthomonadaceae (58 genomes, 540 marker genes, 311 marker sets)