diff tool-data/order.loc.sample @ 0:9b2790bca5b5 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
author iuc
date Fri, 29 Jul 2022 20:29:27 +0000
parents
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/order.loc.sample	Fri Jul 29 20:29:27 2022 +0000
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+# File generated by format_taxon_list.py script
+# taxon	description
+Acholeplasmatales	Acholeplasmatales (12 genomes, 176 marker genes, 88 marker sets)
+Acidilobales	Acidilobales (3 genomes, 558 marker genes, 236 marker sets)
+Acidithiobacillales	Acidithiobacillales (6 genomes, 795 marker genes, 254 marker sets)
+Acidobacteriales	Acidobacteriales (10 genomes, 572 marker genes, 395 marker sets)
+Aciduliprofundum	Aciduliprofundum (2 genomes, 763 marker genes, 130 marker sets)
+Actinomycetales	Actinomycetales (620 genomes, 256 marker genes, 152 marker sets)
+Aeromonadales	Aeromonadales (23 genomes, 456 marker genes, 237 marker sets)
+Alteromonadales	Alteromonadales (116 genomes, 519 marker genes, 267 marker sets)
+Aquificales	Aquificales (18 genomes, 486 marker genes, 369 marker sets)
+Archaeoglobales	Archaeoglobales (5 genomes, 619 marker genes, 392 marker sets)
+Bacillales	Bacillales (331 genomes, 319 marker genes, 134 marker sets)
+Bacteroidales	Bacteroidales (210 genomes, 402 marker genes, 267 marker sets)
+Bacteroidetes Order II. Incertae sedis	Bacteroidetes Order II. Incertae sedis (5 genomes, 801 marker genes, 466 marker sets)
+Bankia	Bankia (2 genomes, 1388 marker genes, 332 marker sets)
+Bdellovibrionales	Bdellovibrionales (5 genomes, 466 marker genes, 290 marker sets)
+Bifidobacteriales	Bifidobacteriales (77 genomes, 464 marker genes, 220 marker sets)
+Burkholderiales	Burkholderiales (194 genomes, 427 marker genes, 216 marker sets)
+Campylobacterales	Campylobacterales (107 genomes, 458 marker genes, 273 marker sets)
+Cardiobacteriales	Cardiobacteriales (3 genomes, 807 marker genes, 349 marker sets)
+Caulobacterales	Caulobacterales (15 genomes, 644 marker genes, 366 marker sets)
+Chlamydiales	Chlamydiales (64 genomes, 455 marker genes, 185 marker sets)
+Chlorobiales	Chlorobiales (12 genomes, 612 marker genes, 333 marker sets)
+Chloroflexales	Chloroflexales (8 genomes, 501 marker genes, 342 marker sets)
+Chromatiales	Chromatiales (92 genomes, 595 marker genes, 283 marker sets)
+Chroococcales	Chroococcales (55 genomes, 490 marker genes, 378 marker sets)
+Clostridiales	Clostridiales (395 genomes, 202 marker genes, 114 marker sets)
+Coriobacteriales	Coriobacteriales (23 genomes, 304 marker genes, 155 marker sets)
+Cytophagales	Cytophagales (48 genomes, 438 marker genes, 328 marker sets)
+Deferribacterales	Deferribacterales (6 genomes, 564 marker genes, 339 marker sets)
+Dehalococcoidales	Dehalococcoidales (5 genomes, 755 marker genes, 54 marker sets)
+Deinococcales	Deinococcales (17 genomes, 563 marker genes, 388 marker sets)
+Desulfobacterales	Desulfobacterales (20 genomes, 320 marker genes, 189 marker sets)
+Desulfovibrionales	Desulfovibrionales (40 genomes, 454 marker genes, 252 marker sets)
+Desulfurellales	Desulfurellales (4 genomes, 817 marker genes, 252 marker sets)
+Desulfurococcales	Desulfurococcales (14 genomes, 287 marker genes, 213 marker sets)
+Desulfuromonadales	Desulfuromonadales (13 genomes, 550 marker genes, 283 marker sets)
+Dictyoglomales	Dictyoglomales (2 genomes, 1060 marker genes, 103 marker sets)
+Enterobacteriales	Enterobacteriales (262 genomes, 297 marker genes, 121 marker sets)
+Entomoplasmatales	Entomoplasmatales (9 genomes, 362 marker genes, 151 marker sets)
+Erysipelotrichales	Erysipelotrichales (18 genomes, 301 marker genes, 159 marker sets)
+Flavobacteriales	Flavobacteriales (126 genomes, 321 marker genes, 202 marker sets)
+Fusobacteriales	Fusobacteriales (32 genomes, 289 marker genes, 159 marker sets)
+Halanaerobiales	Halanaerobiales (7 genomes, 504 marker genes, 189 marker sets)
+Halobacteriales	Halobacteriales (59 genomes, 367 marker genes, 241 marker sets)
+Holophagales	Holophagales (2 genomes, 883 marker genes, 459 marker sets)
+Hydrogenophilales	Hydrogenophilales (3 genomes, 1205 marker genes, 209 marker sets)
+Ignavibacteriales	Ignavibacteriales (2 genomes, 1003 marker genes, 383 marker sets)
+Lactobacillales	Lactobacillales (490 genomes, 335 marker genes, 183 marker sets)
+Legionellales	Legionellales (23 genomes, 545 marker genes, 269 marker sets)
+Mariprofundales	Mariprofundales (2 genomes, 1329 marker genes, 184 marker sets)
+Methanobacteriales	Methanobacteriales (12 genomes, 513 marker genes, 264 marker sets)
+Methanocellales	Methanocellales (3 genomes, 712 marker genes, 317 marker sets)
+Methanococcales	Methanococcales (16 genomes, 610 marker genes, 439 marker sets)
+Methanomicrobiales	Methanomicrobiales (11 genomes, 465 marker genes, 230 marker sets)
+Methanosarcinales	Methanosarcinales (14 genomes, 438 marker genes, 270 marker sets)
+Methylococcales	Methylococcales (15 genomes, 684 marker genes, 348 marker sets)
+Methylophilales	Methylophilales (16 genomes, 685 marker genes, 234 marker sets)
+Mycoplasmatales	Mycoplasmatales (98 genomes, 217 marker genes, 127 marker sets)
+Myxococcales	Myxococcales (8 genomes, 534 marker genes, 348 marker sets)
+Nautiliales	Nautiliales (4 genomes, 712 marker genes, 351 marker sets)
+Neisseriales	Neisseriales (69 genomes, 658 marker genes, 446 marker sets)
+Nitrosomonadales	Nitrosomonadales (7 genomes, 851 marker genes, 314 marker sets)
+Nitrosopumilales	Nitrosopumilales (2 genomes, 714 marker genes, 109 marker sets)
+Nitrospirales	Nitrospirales (4 genomes, 676 marker genes, 379 marker sets)
+Nostocales	Nostocales (18 genomes, 732 marker genes, 508 marker sets)
+Oceanospirillales	Oceanospirillales (41 genomes, 497 marker genes, 229 marker sets)
+Opitutales	Opitutales (3 genomes, 859 marker genes, 521 marker sets)
+Oscillatoriales	Oscillatoriales (25 genomes, 545 marker genes, 415 marker sets)
+Pasteurellales	Pasteurellales (83 genomes, 767 marker genes, 440 marker sets)
+Planctomycetales	Planctomycetales (10 genomes, 370 marker genes, 265 marker sets)
+Pleurocapsales	Pleurocapsales (6 genomes, 840 marker genes, 624 marker sets)
+Prochlorales	Prochlorales (18 genomes, 806 marker genes, 240 marker sets)
+Pseudomonadales	Pseudomonadales (274 genomes, 549 marker genes, 326 marker sets)
+Rhizobiales	Rhizobiales (349 genomes, 407 marker genes, 244 marker sets)
+Rhodobacterales	Rhodobacterales (104 genomes, 504 marker genes, 327 marker sets)
+Rhodocyclales	Rhodocyclales (26 genomes, 625 marker genes, 264 marker sets)
+Rhodospirillales	Rhodospirillales (57 genomes, 367 marker genes, 228 marker sets)
+Rickettsiales	Rickettsiales (81 genomes, 325 marker genes, 210 marker sets)
+Rubrobacterales	Rubrobacterales (2 genomes, 991 marker genes, 269 marker sets)
+Selenomonadales	Selenomonadales (64 genomes, 334 marker genes, 167 marker sets)
+Solirubrobacterales	Solirubrobacterales (4 genomes, 721 marker genes, 307 marker sets)
+Sphingobacteriales	Sphingobacteriales (27 genomes, 334 marker genes, 233 marker sets)
+Sphingomonadales	Sphingomonadales (31 genomes, 490 marker genes, 270 marker sets)
+Spirochaetales	Spirochaetales (71 genomes, 218 marker genes, 127 marker sets)
+Stigonematales	Stigonematales (5 genomes, 1007 marker genes, 576 marker sets)
+Sulfolobales	Sulfolobales (20 genomes, 499 marker genes, 141 marker sets)
+Synergistales	Synergistales (13 genomes, 452 marker genes, 160 marker sets)
+Thermales	Thermales (23 genomes, 585 marker genes, 331 marker sets)
+Thermoanaerobacterales	Thermoanaerobacterales (44 genomes, 308 marker genes, 158 marker sets)
+Thermococcales	Thermococcales (16 genomes, 500 marker genes, 315 marker sets)
+Thermodesulfobacteriales	Thermodesulfobacteriales (5 genomes, 813 marker genes, 440 marker sets)
+Thermoplasmatales	Thermoplasmatales (4 genomes, 563 marker genes, 310 marker sets)
+Thermoproteales	Thermoproteales (13 genomes, 315 marker genes, 257 marker sets)
+Thermotogales	Thermotogales (14 genomes, 460 marker genes, 267 marker sets)
+Thiotrichales	Thiotrichales (64 genomes, 406 marker genes, 251 marker sets)
+Verrucomicrobiales	Verrucomicrobiales (7 genomes, 403 marker genes, 284 marker sets)
+Vibrionales	Vibrionales (80 genomes, 922 marker genes, 367 marker sets)
+Xanthomonadales	Xanthomonadales (63 genomes, 499 marker genes, 264 marker sets)