Mercurial > repos > iuc > checkm_tree
diff tool-data/family.loc.sample @ 5:d030ce59f075 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit ea21e425f6a04a586626c4a6d848aed1d1261b30
| author | iuc |
|---|---|
| date | Sat, 16 Aug 2025 10:22:33 +0000 |
| parents | 626ab1058170 |
| children |
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--- a/tool-data/family.loc.sample Tue Jun 17 12:58:00 2025 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,233 +0,0 @@ -# File generated by format_taxon_list.py script -# taxon description -Acetobacteraceae Acetobacteraceae (30 genomes, 473 marker genes, 264 marker sets) -Acholeplasmataceae Acholeplasmataceae (12 genomes, 176 marker genes, 88 marker sets) -Acidaminococcaceae Acidaminococcaceae (7 genomes, 677 marker genes, 256 marker sets) -Acidilobaceae Acidilobaceae (2 genomes, 645 marker genes, 144 marker sets) -Acidithiobacillaceae Acidithiobacillaceae (5 genomes, 907 marker genes, 200 marker sets) -Acidobacteriaceae Acidobacteriaceae (9 genomes, 575 marker genes, 396 marker sets) -Aciduliprofundum Aciduliprofundum (2 genomes, 763 marker genes, 130 marker sets) -Actinomycetaceae Actinomycetaceae (42 genomes, 420 marker genes, 211 marker sets) -Actinopolysporaceae Actinopolysporaceae (3 genomes, 872 marker genes, 433 marker sets) -Aerococcaceae Aerococcaceae (10 genomes, 424 marker genes, 195 marker sets) -Aeromonadaceae Aeromonadaceae (17 genomes, 841 marker genes, 368 marker sets) -Alcaligenaceae Alcaligenaceae (27 genomes, 486 marker genes, 218 marker sets) -Alcanivoracaceae Alcanivoracaceae (8 genomes, 877 marker genes, 350 marker sets) -Alicyclobacillaceae Alicyclobacillaceae (9 genomes, 608 marker genes, 229 marker sets) -Alteromonadaceae Alteromonadaceae (38 genomes, 590 marker genes, 296 marker sets) -Anaplasmataceae Anaplasmataceae (18 genomes, 319 marker genes, 212 marker sets) -Aquificaceae Aquificaceae (10 genomes, 656 marker genes, 475 marker sets) -Archaeoglobaceae Archaeoglobaceae (5 genomes, 619 marker genes, 392 marker sets) -Arthrospira Arthrospira (2 genomes, 1432 marker genes, 419 marker sets) -Aurantimonadaceae Aurantimonadaceae (4 genomes, 883 marker genes, 434 marker sets) -Bacillaceae Bacillaceae (162 genomes, 418 marker genes, 155 marker sets) -Bacteroidaceae Bacteroidaceae (96 genomes, 524 marker genes, 282 marker sets) -Bankia Bankia (2 genomes, 1388 marker genes, 332 marker sets) -Bartonellaceae Bartonellaceae (29 genomes, 708 marker genes, 188 marker sets) -Bdellovibrionaceae Bdellovibrionaceae (4 genomes, 561 marker genes, 331 marker sets) -Beijerinckiaceae Beijerinckiaceae (4 genomes, 1024 marker genes, 488 marker sets) -Bifidobacteriaceae Bifidobacteriaceae (77 genomes, 464 marker genes, 220 marker sets) -Blattabacteriaceae Blattabacteriaceae (6 genomes, 547 marker genes, 16 marker sets) -Brachyspiraceae Brachyspiraceae (10 genomes, 783 marker genes, 458 marker sets) -Bradyrhizobiaceae Bradyrhizobiaceae (52 genomes, 619 marker genes, 276 marker sets) -Brevibacteriaceae Brevibacteriaceae (3 genomes, 833 marker genes, 259 marker sets) -Brucellaceae Brucellaceae (94 genomes, 1206 marker genes, 241 marker sets) -Burkholderiaceae Burkholderiaceae (94 genomes, 568 marker genes, 224 marker sets) -Campylobacteraceae Campylobacteraceae (66 genomes, 505 marker genes, 274 marker sets) -Cardiobacteriaceae Cardiobacteriaceae (3 genomes, 807 marker genes, 349 marker sets) -Carnobacteriaceae Carnobacteriaceae (7 genomes, 469 marker genes, 197 marker sets) -Caulobacteraceae Caulobacteraceae (15 genomes, 644 marker genes, 366 marker sets) -Cellulomonadaceae Cellulomonadaceae (7 genomes, 766 marker genes, 260 marker sets) -Chitinophagaceae Chitinophagaceae (8 genomes, 634 marker genes, 396 marker sets) -Chlamydiaceae Chlamydiaceae (59 genomes, 590 marker genes, 92 marker sets) -Chlorobiaceae Chlorobiaceae (12 genomes, 612 marker genes, 333 marker sets) -Chloroflexaceae Chloroflexaceae (7 genomes, 570 marker genes, 386 marker sets) -Chromatiaceae Chromatiaceae (14 genomes, 545 marker genes, 300 marker sets) -Chroococcidiopsis Chroococcidiopsis (2 genomes, 1159 marker genes, 811 marker sets) -Clostridiaceae Clostridiaceae (10 genomes, 387 marker genes, 178 marker sets) -Clostridiales Family XI. Incertae Sedis Clostridiales Family XI. Incertae Sedis (20 genomes, 345 marker genes, 186 marker sets) -Clostridiales Family XVII. Incertae Sedis Clostridiales Family XVII. Incertae Sedis (5 genomes, 682 marker genes, 263 marker sets) -Colwelliaceae Colwelliaceae (3 genomes, 1371 marker genes, 293 marker sets) -Comamonadaceae Comamonadaceae (41 genomes, 669 marker genes, 297 marker sets) -Conexibacteraceae Conexibacteraceae (2 genomes, 1064 marker genes, 347 marker sets) -Coriobacteriaceae Coriobacteriaceae (23 genomes, 304 marker genes, 155 marker sets) -Corynebacteriaceae Corynebacteriaceae (80 genomes, 585 marker genes, 243 marker sets) -Coxiellaceae Coxiellaceae (5 genomes, 1047 marker genes, 146 marker sets) -Cryomorphaceae Cryomorphaceae (3 genomes, 782 marker genes, 490 marker sets) -Cyanobacterium Cyanobacterium (4 genomes, 650 marker genes, 477 marker sets) -Cyanobium Cyanobium (2 genomes, 1225 marker genes, 277 marker sets) -Cyanothece Cyanothece (8 genomes, 865 marker genes, 653 marker sets) -Cyclobacteriaceae Cyclobacteriaceae (13 genomes, 720 marker genes, 342 marker sets) -Cytophagaceae Cytophagaceae (30 genomes, 383 marker genes, 278 marker sets) -Deferribacteraceae Deferribacteraceae (5 genomes, 768 marker genes, 300 marker sets) -Dehalococcoidaceae Dehalococcoidaceae (5 genomes, 755 marker genes, 54 marker sets) -Deinococcaceae Deinococcaceae (16 genomes, 630 marker genes, 426 marker sets) -Dermabacteraceae Dermabacteraceae (2 genomes, 876 marker genes, 242 marker sets) -Dermacoccaceae Dermacoccaceae (3 genomes, 776 marker genes, 316 marker sets) -Dermatophilaceae Dermatophilaceae (3 genomes, 866 marker genes, 346 marker sets) -Desulfobacteraceae Desulfobacteraceae (14 genomes, 394 marker genes, 216 marker sets) -Desulfobulbaceae Desulfobulbaceae (6 genomes, 626 marker genes, 290 marker sets) -Desulfohalobiaceae Desulfohalobiaceae (3 genomes, 774 marker genes, 358 marker sets) -Desulfomicrobiaceae Desulfomicrobiaceae (2 genomes, 1255 marker genes, 271 marker sets) -Desulfovibrionaceae Desulfovibrionaceae (34 genomes, 497 marker genes, 270 marker sets) -Desulfurellaceae Desulfurellaceae (4 genomes, 817 marker genes, 252 marker sets) -Desulfurobacteriaceae Desulfurobacteriaceae (2 genomes, 965 marker genes, 410 marker sets) -Desulfurococcaceae Desulfurococcaceae (12 genomes, 310 marker genes, 223 marker sets) -Dictyoglomaceae Dictyoglomaceae (2 genomes, 1060 marker genes, 103 marker sets) -Ectothiorhodospiraceae Ectothiorhodospiraceae (77 genomes, 837 marker genes, 294 marker sets) -Enterobacteriaceae Enterobacteriaceae (262 genomes, 297 marker genes, 121 marker sets) -Enterococcaceae Enterococcaceae (55 genomes, 542 marker genes, 226 marker sets) -Entomoplasmataceae Entomoplasmataceae (8 genomes, 383 marker genes, 120 marker sets) -Erysipelotrichaceae Erysipelotrichaceae (18 genomes, 301 marker genes, 159 marker sets) -Erythrobacteraceae Erythrobacteraceae (4 genomes, 1071 marker genes, 266 marker sets) -Eubacteriaceae Eubacteriaceae (22 genomes, 221 marker genes, 140 marker sets) -Exiguobacterium Exiguobacterium (11 genomes, 1039 marker genes, 263 marker sets) -Fangia Fangia (2 genomes, 1383 marker genes, 144 marker sets) -Ferrimonadaceae Ferrimonadaceae (4 genomes, 1311 marker genes, 393 marker sets) -Fischerella Fischerella (4 genomes, 1081 marker genes, 585 marker sets) -Flammeovirgaceae Flammeovirgaceae (5 genomes, 626 marker genes, 437 marker sets) -Flavobacteriaceae Flavobacteriaceae (115 genomes, 457 marker genes, 309 marker sets) -Francisellaceae Francisellaceae (40 genomes, 787 marker genes, 238 marker sets) -Frankiaceae Frankiaceae (12 genomes, 569 marker genes, 282 marker sets) -Fusobacteriaceae Fusobacteriaceae (23 genomes, 431 marker genes, 189 marker sets) -Gemella Gemella (5 genomes, 787 marker genes, 169 marker sets) -Geobacteraceae Geobacteraceae (11 genomes, 631 marker genes, 310 marker sets) -Geodermatophilaceae Geodermatophilaceae (5 genomes, 878 marker genes, 296 marker sets) -Gloeocapsa Gloeocapsa (2 genomes, 1115 marker genes, 740 marker sets) -Glycomycetaceae Glycomycetaceae (4 genomes, 840 marker genes, 375 marker sets) -Gordoniaceae Gordoniaceae (26 genomes, 670 marker genes, 298 marker sets) -Hahellaceae Hahellaceae (3 genomes, 1080 marker genes, 468 marker sets) -Halanaerobiaceae Halanaerobiaceae (3 genomes, 702 marker genes, 192 marker sets) -Halobacteriaceae Halobacteriaceae (58 genomes, 371 marker genes, 244 marker sets) -Halobacteroidaceae Halobacteroidaceae (4 genomes, 788 marker genes, 219 marker sets) -Halomonadaceae Halomonadaceae (15 genomes, 684 marker genes, 246 marker sets) -Helicobacteraceae Helicobacteraceae (41 genomes, 498 marker genes, 302 marker sets) -Holophagaceae Holophagaceae (2 genomes, 883 marker genes, 459 marker sets) -Hydrogenophilaceae Hydrogenophilaceae (3 genomes, 1205 marker genes, 209 marker sets) -Hydrogenothermaceae Hydrogenothermaceae (6 genomes, 840 marker genes, 402 marker sets) -Hyphomicrobiaceae Hyphomicrobiaceae (12 genomes, 551 marker genes, 325 marker sets) -Hyphomonadaceae Hyphomonadaceae (10 genomes, 761 marker genes, 398 marker sets) -Idiomarinaceae Idiomarinaceae (5 genomes, 1057 marker genes, 247 marker sets) -Intrasporangiaceae Intrasporangiaceae (8 genomes, 651 marker genes, 328 marker sets) -Jonesiaceae Jonesiaceae (2 genomes, 1211 marker genes, 191 marker sets) -Lachnospiraceae Lachnospiraceae (86 genomes, 312 marker genes, 160 marker sets) -Lactobacillaceae Lactobacillaceae (143 genomes, 396 marker genes, 153 marker sets) -Legionellaceae Legionellaceae (18 genomes, 695 marker genes, 290 marker sets) -Leptolyngbya Leptolyngbya (3 genomes, 917 marker genes, 660 marker sets) -Leptospiraceae Leptospiraceae (5 genomes, 902 marker genes, 533 marker sets) -Leptotrichiaceae Leptotrichiaceae (9 genomes, 467 marker genes, 239 marker sets) -Leuconostocaceae Leuconostocaceae (35 genomes, 463 marker genes, 209 marker sets) -Listeriaceae Listeriaceae (25 genomes, 873 marker genes, 158 marker sets) -Lyngbya Lyngbya (2 genomes, 1111 marker genes, 753 marker sets) -Mariprofundaceae Mariprofundaceae (2 genomes, 1329 marker genes, 184 marker sets) -Methanobacteriaceae Methanobacteriaceae (11 genomes, 543 marker genes, 255 marker sets) -Methanocaldococcaceae Methanocaldococcaceae (7 genomes, 743 marker genes, 524 marker sets) -Methanocellaceae Methanocellaceae (3 genomes, 712 marker genes, 317 marker sets) -Methanococcaceae Methanococcaceae (9 genomes, 669 marker genes, 370 marker sets) -Methanocorpusculaceae Methanocorpusculaceae (2 genomes, 889 marker genes, 135 marker sets) -Methanomicrobiaceae Methanomicrobiaceae (4 genomes, 645 marker genes, 231 marker sets) -Methanoregulaceae Methanoregulaceae (4 genomes, 620 marker genes, 220 marker sets) -Methanosaetaceae Methanosaetaceae (3 genomes, 700 marker genes, 354 marker sets) -Methanosarcinaceae Methanosarcinaceae (10 genomes, 579 marker genes, 256 marker sets) -Methylobacteriaceae Methylobacteriaceae (20 genomes, 455 marker genes, 308 marker sets) -Methylococcaceae Methylococcaceae (15 genomes, 684 marker genes, 348 marker sets) -Methylocystaceae Methylocystaceae (11 genomes, 610 marker genes, 373 marker sets) -Methylophilaceae Methylophilaceae (14 genomes, 873 marker genes, 269 marker sets) -Microbacteriaceae Microbacteriaceae (30 genomes, 416 marker genes, 190 marker sets) -Microchaetaceae Microchaetaceae (2 genomes, 1208 marker genes, 646 marker sets) -Micrococcaceae Micrococcaceae (38 genomes, 459 marker genes, 217 marker sets) -Microcoleus Microcoleus (2 genomes, 1191 marker genes, 754 marker sets) -Micromonosporaceae Micromonosporaceae (55 genomes, 713 marker genes, 273 marker sets) -Moraxellaceae Moraxellaceae (86 genomes, 689 marker genes, 365 marker sets) -Mycobacteriaceae Mycobacteriaceae (101 genomes, 682 marker genes, 290 marker sets) -Mycoplasmataceae Mycoplasmataceae (98 genomes, 217 marker genes, 127 marker sets) -Myxococcaceae Myxococcaceae (6 genomes, 707 marker genes, 364 marker sets) -Nakamurellaceae Nakamurellaceae (2 genomes, 1011 marker genes, 427 marker sets) -Nautiliaceae Nautiliaceae (4 genomes, 712 marker genes, 351 marker sets) -Neisseriaceae Neisseriaceae (69 genomes, 658 marker genes, 446 marker sets) -Nitrosomonadaceae Nitrosomonadaceae (7 genomes, 851 marker genes, 314 marker sets) -Nitrosopumilaceae Nitrosopumilaceae (2 genomes, 714 marker genes, 109 marker sets) -Nitrospiraceae Nitrospiraceae (4 genomes, 676 marker genes, 379 marker sets) -Nocardiaceae Nocardiaceae (21 genomes, 559 marker genes, 269 marker sets) -Nocardioidaceae Nocardioidaceae (11 genomes, 470 marker genes, 262 marker sets) -Nocardiopsaceae Nocardiopsaceae (7 genomes, 826 marker genes, 316 marker sets) -Nostocaceae Nostocaceae (13 genomes, 800 marker genes, 536 marker sets) -Oceanospirillaceae Oceanospirillaceae (14 genomes, 636 marker genes, 305 marker sets) -Opitutaceae Opitutaceae (3 genomes, 859 marker genes, 521 marker sets) -Oscillatoria Oscillatoria (3 genomes, 1076 marker genes, 673 marker sets) -Oxalobacteraceae Oxalobacteraceae (16 genomes, 580 marker genes, 265 marker sets) -Paenibacillaceae Paenibacillaceae (44 genomes, 492 marker genes, 188 marker sets) -Parachlamydiaceae Parachlamydiaceae (3 genomes, 775 marker genes, 331 marker sets) -Pasteurellaceae Pasteurellaceae (83 genomes, 767 marker genes, 440 marker sets) -Patulibacteraceae Patulibacteraceae (2 genomes, 1012 marker genes, 347 marker sets) -Pelagibacteraceae Pelagibacteraceae (15 genomes, 695 marker genes, 142 marker sets) -Pelobacteraceae Pelobacteraceae (2 genomes, 958 marker genes, 487 marker sets) -Peptococcaceae Peptococcaceae (23 genomes, 391 marker genes, 153 marker sets) -Peptostreptococcaceae Peptostreptococcaceae (184 genomes, 287 marker genes, 151 marker sets) -Phyllobacteriaceae Phyllobacteriaceae (26 genomes, 598 marker genes, 258 marker sets) -Piscirickettsiaceae Piscirickettsiaceae (16 genomes, 638 marker genes, 292 marker sets) -Planctomycetaceae Planctomycetaceae (10 genomes, 370 marker genes, 265 marker sets) -Planktothrix Planktothrix (6 genomes, 1307 marker genes, 425 marker sets) -Planococcaceae Planococcaceae (6 genomes, 823 marker genes, 233 marker sets) -Pleurocapsa Pleurocapsa (2 genomes, 1138 marker genes, 783 marker sets) -Porphyromonadaceae Porphyromonadaceae (37 genomes, 455 marker genes, 310 marker sets) -Prevotellaceae Prevotellaceae (69 genomes, 553 marker genes, 298 marker sets) -Prochlorococcaceae Prochlorococcaceae (18 genomes, 806 marker genes, 240 marker sets) -Promicromonosporaceae Promicromonosporaceae (6 genomes, 783 marker genes, 376 marker sets) -Propionibacteriaceae Propionibacteriaceae (40 genomes, 532 marker genes, 294 marker sets) -Pseudanabaena Pseudanabaena (2 genomes, 1172 marker genes, 781 marker sets) -Pseudoalteromonadaceae Pseudoalteromonadaceae (21 genomes, 782 marker genes, 307 marker sets) -Pseudomonadaceae Pseudomonadaceae (186 genomes, 800 marker genes, 302 marker sets) -Pseudonocardiaceae Pseudonocardiaceae (32 genomes, 364 marker genes, 201 marker sets) -Psychromonadaceae Psychromonadaceae (5 genomes, 1062 marker genes, 326 marker sets) -Pyrodictiaceae Pyrodictiaceae (2 genomes, 609 marker genes, 346 marker sets) -Rhizobiaceae Rhizobiaceae (85 genomes, 515 marker genes, 225 marker sets) -Rhodobacteraceae Rhodobacteraceae (91 genomes, 528 marker genes, 341 marker sets) -Rhodobiaceae Rhodobiaceae (2 genomes, 1121 marker genes, 424 marker sets) -Rhodocyclaceae Rhodocyclaceae (25 genomes, 641 marker genes, 269 marker sets) -Rhodospirillaceae Rhodospirillaceae (26 genomes, 300 marker genes, 163 marker sets) -Rhodothermaceae Rhodothermaceae (5 genomes, 801 marker genes, 466 marker sets) -Rickettsiaceae Rickettsiaceae (46 genomes, 528 marker genes, 196 marker sets) -Rikenellaceae Rikenellaceae (6 genomes, 648 marker genes, 386 marker sets) -Rivulariaceae Rivulariaceae (3 genomes, 1070 marker genes, 642 marker sets) -Rubrivivax Rubrivivax (3 genomes, 1586 marker genes, 343 marker sets) -Rubrobacteraceae Rubrobacteraceae (2 genomes, 991 marker genes, 269 marker sets) -Ruminococcaceae Ruminococcaceae (20 genomes, 284 marker genes, 161 marker sets) -Saprospiraceae Saprospiraceae (5 genomes, 671 marker genes, 479 marker sets) -Shewanellaceae Shewanellaceae (26 genomes, 989 marker genes, 339 marker sets) -Sinobacteraceae Sinobacteraceae (4 genomes, 1083 marker genes, 398 marker sets) -Solirubrobacteraceae Solirubrobacteraceae (2 genomes, 995 marker genes, 398 marker sets) -Sphingobacteriaceae Sphingobacteriaceae (11 genomes, 575 marker genes, 344 marker sets) -Sphingomonadaceae Sphingomonadaceae (27 genomes, 501 marker genes, 275 marker sets) -Spirochaetaceae Spirochaetaceae (56 genomes, 235 marker genes, 124 marker sets) -Sporolactobacillaceae Sporolactobacillaceae (2 genomes, 1066 marker genes, 320 marker sets) -Staphylococcaceae Staphylococcaceae (64 genomes, 642 marker genes, 181 marker sets) -Streptococcaceae Streptococcaceae (240 genomes, 524 marker genes, 282 marker sets) -Streptomycetaceae Streptomycetaceae (58 genomes, 506 marker genes, 264 marker sets) -Streptosporangiaceae Streptosporangiaceae (2 genomes, 1116 marker genes, 473 marker sets) -Succinivibrionaceae Succinivibrionaceae (6 genomes, 637 marker genes, 317 marker sets) -Sulfolobaceae Sulfolobaceae (19 genomes, 526 marker genes, 149 marker sets) -Sutterellaceae Sutterellaceae (4 genomes, 792 marker genes, 261 marker sets) -Synechococcus Synechococcus (25 genomes, 554 marker genes, 425 marker sets) -Synechocystis Synechocystis (5 genomes, 1099 marker genes, 794 marker sets) -Synergistaceae Synergistaceae (13 genomes, 452 marker genes, 160 marker sets) -Syntrophomonadaceae Syntrophomonadaceae (3 genomes, 744 marker genes, 271 marker sets) -Teredinibacter Teredinibacter (10 genomes, 1162 marker genes, 360 marker sets) -Thermaceae Thermaceae (23 genomes, 585 marker genes, 331 marker sets) -Thermoactinomycetaceae Thermoactinomycetaceae (2 genomes, 1027 marker genes, 387 marker sets) -Thermoanaerobacteraceae Thermoanaerobacteraceae (24 genomes, 438 marker genes, 193 marker sets) -Thermoanaerobacterales Family III. Incertae Sedis Thermoanaerobacterales Family III. Incertae Sedis (16 genomes, 599 marker genes, 251 marker sets) -Thermococcaceae Thermococcaceae (16 genomes, 500 marker genes, 315 marker sets) -Thermodesulfobacteriaceae Thermodesulfobacteriaceae (5 genomes, 813 marker genes, 440 marker sets) -Thermodesulfobiaceae Thermodesulfobiaceae (3 genomes, 538 marker genes, 284 marker sets) -Thermomonosporaceae Thermomonosporaceae (4 genomes, 839 marker genes, 346 marker sets) -Thermoplasmataceae Thermoplasmataceae (2 genomes, 733 marker genes, 167 marker sets) -Thermoproteaceae Thermoproteaceae (12 genomes, 410 marker genes, 333 marker sets) -Thermotogaceae Thermotogaceae (14 genomes, 460 marker genes, 267 marker sets) -Thiomonas Thiomonas (3 genomes, 1202 marker genes, 366 marker sets) -Thiotrichaceae Thiotrichaceae (6 genomes, 764 marker genes, 473 marker sets) -Veillonellaceae Veillonellaceae (57 genomes, 345 marker genes, 171 marker sets) -Verrucomicrobiaceae Verrucomicrobiaceae (5 genomes, 505 marker genes, 342 marker sets) -Vibrionaceae Vibrionaceae (80 genomes, 922 marker genes, 367 marker sets) -Xanthobacteraceae Xanthobacteraceae (9 genomes, 824 marker genes, 433 marker sets) -Xanthomonadaceae Xanthomonadaceae (58 genomes, 540 marker genes, 311 marker sets)
