diff tool-data/genus.loc.sample @ 5:d030ce59f075 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit ea21e425f6a04a586626c4a6d848aed1d1261b30
author iuc
date Sat, 16 Aug 2025 10:22:33 +0000
parents 626ab1058170
children
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--- a/tool-data/genus.loc.sample	Tue Jun 17 12:58:00 2025 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
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-# File generated by format_taxon_list.py script
-# taxon	description
-Acetobacter	Acetobacter (11 genomes, 1037 marker genes, 392 marker sets)
-Acholeplasma	Acholeplasma (7 genomes, 309 marker genes, 151 marker sets)
-Achromobacter	Achromobacter (5 genomes, 1298 marker genes, 427 marker sets)
-Acidaminococcus	Acidaminococcus (5 genomes, 910 marker genes, 256 marker sets)
-Acidilobus	Acidilobus (2 genomes, 645 marker genes, 144 marker sets)
-Acidiphilium	Acidiphilium (3 genomes, 1244 marker genes, 339 marker sets)
-Acidithiobacillus	Acidithiobacillus (5 genomes, 907 marker genes, 200 marker sets)
-Acidobacterium	Acidobacterium (2 genomes, 1151 marker genes, 582 marker sets)
-Acidovorax	Acidovorax (9 genomes, 931 marker genes, 335 marker sets)
-Aciduliprofundum	Aciduliprofundum (2 genomes, 763 marker genes, 130 marker sets)
-Acinetobacter	Acinetobacter (66 genomes, 883 marker genes, 281 marker sets)
-Actinobacillus	Actinobacillus (18 genomes, 1004 marker genes, 589 marker sets)
-Actinobaculum	Actinobaculum (5 genomes, 606 marker genes, 222 marker sets)
-Actinomadura	Actinomadura (3 genomes, 940 marker genes, 376 marker sets)
-Actinomyces	Actinomyces (27 genomes, 432 marker genes, 214 marker sets)
-Actinoplanes	Actinoplanes (3 genomes, 1041 marker genes, 394 marker sets)
-Actinopolyspora	Actinopolyspora (3 genomes, 872 marker genes, 433 marker sets)
-Aequorivita	Aequorivita (2 genomes, 1087 marker genes, 283 marker sets)
-Aerococcus	Aerococcus (2 genomes, 719 marker genes, 247 marker sets)
-Aeromonas	Aeromonas (12 genomes, 1380 marker genes, 463 marker sets)
-Aggregatibacter	Aggregatibacter (13 genomes, 991 marker genes, 357 marker sets)
-Agrobacterium	Agrobacterium (12 genomes, 994 marker genes, 379 marker sets)
-Agromyces	Agromyces (2 genomes, 1096 marker genes, 287 marker sets)
-Ahrensia	Ahrensia (2 genomes, 1213 marker genes, 422 marker sets)
-Alcaligenes	Alcaligenes (2 genomes, 1577 marker genes, 235 marker sets)
-Alcanivorax	Alcanivorax (6 genomes, 1175 marker genes, 317 marker sets)
-Algoriphagus	Algoriphagus (5 genomes, 947 marker genes, 361 marker sets)
-Aliagarivorans	Aliagarivorans (2 genomes, 1740 marker genes, 251 marker sets)
-Alicycliphilus	Alicycliphilus (2 genomes, 1650 marker genes, 258 marker sets)
-Alicyclobacillus	Alicyclobacillus (8 genomes, 664 marker genes, 240 marker sets)
-Alishewanella	Alishewanella (2 genomes, 1677 marker genes, 232 marker sets)
-Alistipes	Alistipes (5 genomes, 703 marker genes, 335 marker sets)
-Alkaliphilus	Alkaliphilus (2 genomes, 970 marker genes, 326 marker sets)
-Alloscardovia	Alloscardovia (2 genomes, 950 marker genes, 116 marker sets)
-Alteromonas	Alteromonas (6 genomes, 1419 marker genes, 314 marker sets)
-Aminobacterium	Aminobacterium (2 genomes, 950 marker genes, 145 marker sets)
-Amycolatopsis	Amycolatopsis (12 genomes, 644 marker genes, 302 marker sets)
-Anabaena	Anabaena (5 genomes, 992 marker genes, 584 marker sets)
-Anaerococcus	Anaerococcus (6 genomes, 665 marker genes, 181 marker sets)
-Anaeromyxobacter	Anaeromyxobacter (4 genomes, 1162 marker genes, 375 marker sets)
-Anaplasma	Anaplasma (2 genomes, 688 marker genes, 127 marker sets)
-Anoxybacillus	Anoxybacillus (5 genomes, 1141 marker genes, 212 marker sets)
-Aquimarina	Aquimarina (2 genomes, 1084 marker genes, 373 marker sets)
-Archaeoglobus	Archaeoglobus (4 genomes, 662 marker genes, 415 marker sets)
-Arcobacter	Arcobacter (8 genomes, 804 marker genes, 234 marker sets)
-Arenibacter	Arenibacter (2 genomes, 1200 marker genes, 269 marker sets)
-Arsenophonus	Arsenophonus (4 genomes, 640 marker genes, 164 marker sets)
-Arthrobacter	Arthrobacter (25 genomes, 473 marker genes, 190 marker sets)
-Arthrospira	Arthrospira (2 genomes, 1432 marker genes, 419 marker sets)
-Asticcacaulis	Asticcacaulis (3 genomes, 1116 marker genes, 409 marker sets)
-Atopobium	Atopobium (8 genomes, 486 marker genes, 194 marker sets)
-Aurantimonas	Aurantimonas (2 genomes, 1288 marker genes, 356 marker sets)
-Azoarcus	Azoarcus (2 genomes, 1311 marker genes, 376 marker sets)
-Azorhizobium	Azorhizobium (2 genomes, 1547 marker genes, 390 marker sets)
-Azospira	Azospira (2 genomes, 1578 marker genes, 218 marker sets)
-Azospirillum	Azospirillum (3 genomes, 1038 marker genes, 549 marker sets)
-Azotobacter	Azotobacter (3 genomes, 1930 marker genes, 269 marker sets)
-Bacillus	Bacillus (122 genomes, 491 marker genes, 170 marker sets)
-Bacteroides	Bacteroides (96 genomes, 524 marker genes, 282 marker sets)
-Bankia	Bankia (2 genomes, 1388 marker genes, 332 marker sets)
-Barnesiella	Barnesiella (2 genomes, 1045 marker genes, 230 marker sets)
-Bartonella	Bartonella (29 genomes, 708 marker genes, 188 marker sets)
-Bdellovibrio	Bdellovibrio (3 genomes, 843 marker genes, 296 marker sets)
-Bifidobacterium	Bifidobacterium (57 genomes, 582 marker genes, 204 marker sets)
-Blastococcus	Blastococcus (2 genomes, 1123 marker genes, 317 marker sets)
-Blattabacterium	Blattabacterium (6 genomes, 547 marker genes, 16 marker sets)
-Blautia	Blautia (7 genomes, 649 marker genes, 291 marker sets)
-Bordetella	Bordetella (9 genomes, 892 marker genes, 277 marker sets)
-Borrelia	Borrelia (17 genomes, 474 marker genes, 66 marker sets)
-Brachyspira	Brachyspira (10 genomes, 783 marker genes, 458 marker sets)
-Bradyrhizobium	Bradyrhizobium (36 genomes, 826 marker genes, 337 marker sets)
-Brevibacillus	Brevibacillus (4 genomes, 1162 marker genes, 391 marker sets)
-Brevibacterium	Brevibacterium (3 genomes, 833 marker genes, 259 marker sets)
-Brevundimonas	Brevundimonas (6 genomes, 952 marker genes, 452 marker sets)
-Brucella	Brucella (90 genomes, 1371 marker genes, 236 marker sets)
-Buchnera	Buchnera (10 genomes, 380 marker genes, 35 marker sets)
-Burkholderia	Burkholderia (66 genomes, 724 marker genes, 235 marker sets)
-Butyricimonas	Butyricimonas (2 genomes, 1102 marker genes, 296 marker sets)
-Butyrivibrio	Butyrivibrio (31 genomes, 578 marker genes, 245 marker sets)
-Caldicellulosiruptor	Caldicellulosiruptor (11 genomes, 1010 marker genes, 169 marker sets)
-Calothrix	Calothrix (2 genomes, 1244 marker genes, 726 marker sets)
-Campylobacter	Campylobacter (55 genomes, 598 marker genes, 263 marker sets)
-Candidatus Arthromitus	Candidatus Arthromitus (5 genomes, 889 marker genes, 153 marker sets)
-Candidatus Blochmannia	Candidatus Blochmannia (3 genomes, 714 marker genes, 3 marker sets)
-Candidatus Liberibacter	Candidatus Liberibacter (3 genomes, 764 marker genes, 141 marker sets)
-Candidatus Pelagibacter	Candidatus Pelagibacter (12 genomes, 715 marker genes, 144 marker sets)
-Candidatus Pelagibacter-like	Candidatus Pelagibacter-like (3 genomes, 911 marker genes, 76 marker sets)
-Candidatus Phytoplasma	Candidatus Phytoplasma (4 genomes, 294 marker genes, 86 marker sets)
-Capnocytophaga	Capnocytophaga (15 genomes, 728 marker genes, 514 marker sets)
-Carboxydothermus	Carboxydothermus (2 genomes, 1295 marker genes, 139 marker sets)
-Cardiobacterium	Cardiobacterium (2 genomes, 1153 marker genes, 474 marker sets)
-Caulobacter	Caulobacter (4 genomes, 1219 marker genes, 375 marker sets)
-Cellulomonas	Cellulomonas (6 genomes, 805 marker genes, 257 marker sets)
-Cellulophaga	Cellulophaga (2 genomes, 1092 marker genes, 357 marker sets)
-Chitinilyticum	Chitinilyticum (2 genomes, 1527 marker genes, 343 marker sets)
-Chlamydia	Chlamydia (43 genomes, 609 marker genes, 88 marker sets)
-Chlamydophila	Chlamydophila (16 genomes, 616 marker genes, 71 marker sets)
-Chlorobaculum	Chlorobaculum (2 genomes, 1098 marker genes, 186 marker sets)
-Chlorobium	Chlorobium (6 genomes, 820 marker genes, 277 marker sets)
-Chloroflexus	Chloroflexus (5 genomes, 659 marker genes, 449 marker sets)
-Chroococcidiopsis	Chroococcidiopsis (2 genomes, 1159 marker genes, 811 marker sets)
-Chryseobacterium	Chryseobacterium (6 genomes, 812 marker genes, 414 marker sets)
-Citreicella	Citreicella (2 genomes, 1369 marker genes, 390 marker sets)
-Citrobacter	Citrobacter (8 genomes, 1566 marker genes, 347 marker sets)
-Citromicrobium	Citromicrobium (2 genomes, 1356 marker genes, 186 marker sets)
-Clavibacter	Clavibacter (2 genomes, 1152 marker genes, 228 marker sets)
-Clostridium	Clostridium (180 genomes, 308 marker genes, 161 marker sets)
-Cohnella	Cohnella (3 genomes, 1072 marker genes, 306 marker sets)
-Collinsella	Collinsella (2 genomes, 829 marker genes, 315 marker sets)
-Colwellia	Colwellia (3 genomes, 1371 marker genes, 293 marker sets)
-Comamonas	Comamonas (5 genomes, 1047 marker genes, 399 marker sets)
-Commensalibacter	Commensalibacter (2 genomes, 1241 marker genes, 137 marker sets)
-Conchiformibius	Conchiformibius (2 genomes, 1237 marker genes, 317 marker sets)
-Coprobacillus	Coprobacillus (3 genomes, 833 marker genes, 331 marker sets)
-Coprococcus	Coprococcus (3 genomes, 780 marker genes, 260 marker sets)
-Coprothermobacter	Coprothermobacter (2 genomes, 870 marker genes, 70 marker sets)
-Corynebacterium	Corynebacterium (80 genomes, 585 marker genes, 243 marker sets)
-Coxiella	Coxiella (5 genomes, 1047 marker genes, 146 marker sets)
-Cronobacter	Cronobacter (4 genomes, 1838 marker genes, 338 marker sets)
-Cupriavidus	Cupriavidus (8 genomes, 1163 marker genes, 352 marker sets)
-Curtobacterium	Curtobacterium (2 genomes, 952 marker genes, 330 marker sets)
-Curvibacter	Curvibacter (2 genomes, 1707 marker genes, 367 marker sets)
-Cyanobacterium	Cyanobacterium (4 genomes, 650 marker genes, 477 marker sets)
-Cyanobium	Cyanobium (2 genomes, 1225 marker genes, 277 marker sets)
-Cyanothece	Cyanothece (8 genomes, 865 marker genes, 653 marker sets)
-Cycloclasticus	Cycloclasticus (2 genomes, 1507 marker genes, 85 marker sets)
-Cytophaga	Cytophaga (3 genomes, 745 marker genes, 464 marker sets)
-Dechloromonas	Dechloromonas (4 genomes, 1203 marker genes, 276 marker sets)
-Dehalobacter	Dehalobacter (3 genomes, 1160 marker genes, 157 marker sets)
-Dehalococcoides	Dehalococcoides (5 genomes, 755 marker genes, 54 marker sets)
-Deinococcus	Deinococcus (16 genomes, 630 marker genes, 426 marker sets)
-Delftia	Delftia (3 genomes, 1683 marker genes, 409 marker sets)
-Desulfatibacillum	Desulfatibacillum (2 genomes, 1377 marker genes, 388 marker sets)
-Desulfobacterium	Desulfobacterium (3 genomes, 680 marker genes, 365 marker sets)
-Desulfobulbus	Desulfobulbus (4 genomes, 863 marker genes, 276 marker sets)
-Desulfomicrobium	Desulfomicrobium (2 genomes, 1255 marker genes, 271 marker sets)
-Desulfosporosinus	Desulfosporosinus (4 genomes, 915 marker genes, 249 marker sets)
-Desulfotignum	Desulfotignum (2 genomes, 1216 marker genes, 274 marker sets)
-Desulfotomaculum	Desulfotomaculum (9 genomes, 640 marker genes, 214 marker sets)
-Desulfovibrio	Desulfovibrio (31 genomes, 431 marker genes, 224 marker sets)
-Desulfurococcus	Desulfurococcus (4 genomes, 599 marker genes, 129 marker sets)
-Dialister	Dialister (4 genomes, 695 marker genes, 210 marker sets)
-Dickeya	Dickeya (4 genomes, 1671 marker genes, 311 marker sets)
-Dictyoglomus	Dictyoglomus (2 genomes, 1060 marker genes, 103 marker sets)
-Dorea	Dorea (4 genomes, 835 marker genes, 261 marker sets)
-Dyadobacter	Dyadobacter (4 genomes, 1056 marker genes, 319 marker sets)
-Dysgonomonas	Dysgonomonas (3 genomes, 912 marker genes, 480 marker sets)
-Echinicola	Echinicola (2 genomes, 1196 marker genes, 350 marker sets)
-Ectothiorhodospira	Ectothiorhodospira (2 genomes, 1465 marker genes, 274 marker sets)
-Edwardsiella	Edwardsiella (2 genomes, 1903 marker genes, 174 marker sets)
-Eggerthella	Eggerthella (4 genomes, 843 marker genes, 301 marker sets)
-Ehrlichia	Ehrlichia (6 genomes, 704 marker genes, 87 marker sets)
-Elizabethkingia	Elizabethkingia (3 genomes, 1251 marker genes, 240 marker sets)
-Ensifer	Ensifer (26 genomes, 1043 marker genes, 323 marker sets)
-Enterobacter	Enterobacter (13 genomes, 1338 marker genes, 370 marker sets)
-Enterococcus	Enterococcus (51 genomes, 672 marker genes, 259 marker sets)
-Enterovibrio	Enterovibrio (2 genomes, 1819 marker genes, 389 marker sets)
-Entomoplasma	Entomoplasma (3 genomes, 460 marker genes, 109 marker sets)
-Eremococcus	Eremococcus (2 genomes, 922 marker genes, 109 marker sets)
-Erwinia	Erwinia (8 genomes, 1420 marker genes, 280 marker sets)
-Erysipelothrix	Erysipelothrix (2 genomes, 843 marker genes, 95 marker sets)
-Erythrobacter	Erythrobacter (3 genomes, 1146 marker genes, 256 marker sets)
-Escherichia	Escherichia (27 genomes, 1212 marker genes, 320 marker sets)
-Eubacterium	Eubacterium (18 genomes, 234 marker genes, 157 marker sets)
-Exiguobacterium	Exiguobacterium (11 genomes, 1039 marker genes, 263 marker sets)
-Facklamia	Facklamia (5 genomes, 575 marker genes, 184 marker sets)
-Faecalibacterium	Faecalibacterium (2 genomes, 1019 marker genes, 264 marker sets)
-Fangia	Fangia (2 genomes, 1383 marker genes, 144 marker sets)
-Ferrimonas	Ferrimonas (4 genomes, 1311 marker genes, 393 marker sets)
-Finegoldia	Finegoldia (5 genomes, 878 marker genes, 111 marker sets)
-Fischerella	Fischerella (4 genomes, 1081 marker genes, 585 marker sets)
-Flavobacterium	Flavobacterium (20 genomes, 575 marker genes, 320 marker sets)
-Flexibacter	Flexibacter (3 genomes, 877 marker genes, 663 marker sets)
-Francisella	Francisella (40 genomes, 787 marker genes, 238 marker sets)
-Frankia	Frankia (11 genomes, 597 marker genes, 285 marker sets)
-Fusobacterium	Fusobacterium (21 genomes, 502 marker genes, 210 marker sets)
-Gallibacterium	Gallibacterium (2 genomes, 1519 marker genes, 168 marker sets)
-Gardnerella	Gardnerella (14 genomes, 621 marker genes, 237 marker sets)
-Gemella	Gemella (5 genomes, 787 marker genes, 169 marker sets)
-Geobacillus	Geobacillus (15 genomes, 823 marker genes, 228 marker sets)
-Geobacter	Geobacter (10 genomes, 732 marker genes, 332 marker sets)
-Gillisia	Gillisia (2 genomes, 1096 marker genes, 276 marker sets)
-Glaciecola	Glaciecola (9 genomes, 1063 marker genes, 369 marker sets)
-Gloeocapsa	Gloeocapsa (2 genomes, 1115 marker genes, 740 marker sets)
-Gluconacetobacter	Gluconacetobacter (4 genomes, 1030 marker genes, 240 marker sets)
-Gluconobacter	Gluconobacter (3 genomes, 1076 marker genes, 207 marker sets)
-Glycomyces	Glycomyces (2 genomes, 1177 marker genes, 326 marker sets)
-Gordonia	Gordonia (26 genomes, 670 marker genes, 298 marker sets)
-Gramella	Gramella (3 genomes, 1089 marker genes, 213 marker sets)
-Granulicatella	Granulicatella (2 genomes, 891 marker genes, 249 marker sets)
-Granulicella	Granulicella (2 genomes, 1075 marker genes, 507 marker sets)
-Haemophilus	Haemophilus (35 genomes, 829 marker genes, 480 marker sets)
-Hahella	Hahella (2 genomes, 1567 marker genes, 475 marker sets)
-Halalkalicoccus	Halalkalicoccus (2 genomes, 1003 marker genes, 212 marker sets)
-Halanaerobium	Halanaerobium (2 genomes, 898 marker genes, 186 marker sets)
-Haliea	Haliea (2 genomes, 1214 marker genes, 329 marker sets)
-Haloarcula	Haloarcula (7 genomes, 842 marker genes, 250 marker sets)
-Halobacillus	Halobacillus (3 genomes, 1266 marker genes, 292 marker sets)
-Halobacterium	Halobacterium (3 genomes, 704 marker genes, 224 marker sets)
-Halobiforma	Halobiforma (2 genomes, 1026 marker genes, 320 marker sets)
-Halococcus	Halococcus (2 genomes, 767 marker genes, 347 marker sets)
-Haloferax	Haloferax (10 genomes, 763 marker genes, 229 marker sets)
-Halomicrobium	Halomicrobium (2 genomes, 970 marker genes, 233 marker sets)
-Halomonas	Halomonas (11 genomes, 840 marker genes, 268 marker sets)
-Haloquadratum	Haloquadratum (3 genomes, 798 marker genes, 192 marker sets)
-Halorubrum	Halorubrum (4 genomes, 710 marker genes, 295 marker sets)
-Haloterrigena	Haloterrigena (2 genomes, 826 marker genes, 332 marker sets)
-Helicobacter	Helicobacter (33 genomes, 490 marker genes, 276 marker sets)
-Herbaspirillum	Herbaspirillum (3 genomes, 1324 marker genes, 341 marker sets)
-Hippea	Hippea (3 genomes, 979 marker genes, 157 marker sets)
-Hirschia	Hirschia (2 genomes, 1333 marker genes, 222 marker sets)
-Histophilus	Histophilus (2 genomes, 1341 marker genes, 98 marker sets)
-Hydrogenobacter	Hydrogenobacter (2 genomes, 1116 marker genes, 52 marker sets)
-Hydrogenobaculum	Hydrogenobaculum (5 genomes, 989 marker genes, 63 marker sets)
-Hymenobacter	Hymenobacter (3 genomes, 998 marker genes, 370 marker sets)
-Hyphomicrobium	Hyphomicrobium (7 genomes, 966 marker genes, 312 marker sets)
-Idiomarina	Idiomarina (5 genomes, 1057 marker genes, 247 marker sets)
-Isoptericola	Isoptericola (2 genomes, 1351 marker genes, 168 marker sets)
-Janibacter	Janibacter (2 genomes, 1001 marker genes, 385 marker sets)
-Janthinobacterium	Janthinobacterium (4 genomes, 1001 marker genes, 351 marker sets)
-Jeotgalicoccus	Jeotgalicoccus (2 genomes, 1124 marker genes, 142 marker sets)
-Jonesia	Jonesia (2 genomes, 1211 marker genes, 191 marker sets)
-Jonquetella	Jonquetella (2 genomes, 987 marker genes, 78 marker sets)
-Kaistia	Kaistia (2 genomes, 1516 marker genes, 278 marker sets)
-Kandleria	Kandleria (3 genomes, 1026 marker genes, 154 marker sets)
-Kangiella	Kangiella (2 genomes, 1480 marker genes, 165 marker sets)
-Kingella	Kingella (3 genomes, 1040 marker genes, 614 marker sets)
-Klebsiella	Klebsiella (29 genomes, 1359 marker genes, 348 marker sets)
-Labrenzia	Labrenzia (2 genomes, 1431 marker genes, 424 marker sets)
-Lachnobacterium	Lachnobacterium (2 genomes, 1164 marker genes, 173 marker sets)
-Lachnospira	Lachnospira (3 genomes, 1045 marker genes, 196 marker sets)
-Lactobacillus	Lactobacillus (135 genomes, 409 marker genes, 155 marker sets)
-Lactococcus	Lactococcus (14 genomes, 683 marker genes, 238 marker sets)
-Laribacter	Laribacter (2 genomes, 1579 marker genes, 150 marker sets)
-Leeuwenhoekiella	Leeuwenhoekiella (2 genomes, 1172 marker genes, 263 marker sets)
-Legionella	Legionella (18 genomes, 695 marker genes, 290 marker sets)
-Leifsonia	Leifsonia (2 genomes, 888 marker genes, 212 marker sets)
-Leisingera	Leisingera (3 genomes, 1200 marker genes, 365 marker sets)
-Leptolyngbya	Leptolyngbya (3 genomes, 917 marker genes, 660 marker sets)
-Leptospira	Leptospira (4 genomes, 1176 marker genes, 280 marker sets)
-Leptotrichia	Leptotrichia (7 genomes, 750 marker genes, 335 marker sets)
-Leucobacter	Leucobacter (2 genomes, 948 marker genes, 255 marker sets)
-Leuconostoc	Leuconostoc (15 genomes, 611 marker genes, 181 marker sets)
-Lewinella	Lewinella (2 genomes, 1073 marker genes, 736 marker sets)
-Listeria	Listeria (24 genomes, 1137 marker genes, 165 marker sets)
-Loktanella	Loktanella (5 genomes, 1000 marker genes, 308 marker sets)
-Luteimonas	Luteimonas (2 genomes, 1277 marker genes, 311 marker sets)
-Lyngbya	Lyngbya (2 genomes, 1111 marker genes, 753 marker sets)
-Lysinibacillus	Lysinibacillus (3 genomes, 1381 marker genes, 323 marker sets)
-Lysobacter	Lysobacter (2 genomes, 1235 marker genes, 265 marker sets)
-Magnetospirillum	Magnetospirillum (3 genomes, 1103 marker genes, 429 marker sets)
-Mannheimia	Mannheimia (4 genomes, 1320 marker genes, 245 marker sets)
-Maribacter	Maribacter (3 genomes, 905 marker genes, 290 marker sets)
-Marinobacter	Marinobacter (8 genomes, 993 marker genes, 273 marker sets)
-Marinobacterium	Marinobacterium (3 genomes, 1157 marker genes, 339 marker sets)
-Marinomonas	Marinomonas (4 genomes, 1256 marker genes, 320 marker sets)
-Mariprofundus	Mariprofundus (2 genomes, 1329 marker genes, 184 marker sets)
-Maritimibacter	Maritimibacter (2 genomes, 1288 marker genes, 421 marker sets)
-Massilia	Massilia (3 genomes, 1363 marker genes, 402 marker sets)
-Megamonas	Megamonas (3 genomes, 1113 marker genes, 288 marker sets)
-Megasphaera	Megasphaera (7 genomes, 696 marker genes, 211 marker sets)
-Meiothermus	Meiothermus (7 genomes, 852 marker genes, 456 marker sets)
-Mesoplasma	Mesoplasma (5 genomes, 409 marker genes, 104 marker sets)
-Mesorhizobium	Mesorhizobium (20 genomes, 767 marker genes, 381 marker sets)
-Metallosphaera	Metallosphaera (3 genomes, 690 marker genes, 177 marker sets)
-Methanobacterium	Methanobacterium (3 genomes, 797 marker genes, 214 marker sets)
-Methanobrevibacter	Methanobrevibacter (5 genomes, 748 marker genes, 267 marker sets)
-Methanocaldococcus	Methanocaldococcus (5 genomes, 799 marker genes, 537 marker sets)
-Methanocella	Methanocella (3 genomes, 712 marker genes, 317 marker sets)
-Methanococcus	Methanococcus (7 genomes, 710 marker genes, 377 marker sets)
-Methanocorpusculum	Methanocorpusculum (2 genomes, 889 marker genes, 135 marker sets)
-Methanolobus	Methanolobus (2 genomes, 944 marker genes, 240 marker sets)
-Methanoplanus	Methanoplanus (2 genomes, 830 marker genes, 217 marker sets)
-Methanosaeta	Methanosaeta (3 genomes, 700 marker genes, 354 marker sets)
-Methanosarcina	Methanosarcina (3 genomes, 849 marker genes, 306 marker sets)
-Methanothermobacter	Methanothermobacter (2 genomes, 965 marker genes, 76 marker sets)
-Methanothermococcus	Methanothermococcus (2 genomes, 869 marker genes, 366 marker sets)
-Methanotorris	Methanotorris (2 genomes, 891 marker genes, 279 marker sets)
-Methylobacter	Methylobacter (2 genomes, 1294 marker genes, 436 marker sets)
-Methylobacterium	Methylobacterium (16 genomes, 606 marker genes, 394 marker sets)
-Methylococcus	Methylococcus (2 genomes, 1613 marker genes, 188 marker sets)
-Methylocystis	Methylocystis (3 genomes, 1172 marker genes, 334 marker sets)
-Methylomicrobium	Methylomicrobium (2 genomes, 1316 marker genes, 550 marker sets)
-Methylomonas	Methylomonas (4 genomes, 1325 marker genes, 423 marker sets)
-Methylophaga	Methylophaga (4 genomes, 1119 marker genes, 219 marker sets)
-Methylophilus	Methylophilus (4 genomes, 1346 marker genes, 180 marker sets)
-Methylopila	Methylopila (2 genomes, 1430 marker genes, 482 marker sets)
-Methylosarcina	Methylosarcina (2 genomes, 1415 marker genes, 498 marker sets)
-Methylosinus	Methylosinus (3 genomes, 1300 marker genes, 501 marker sets)
-Methylotenera	Methylotenera (6 genomes, 1078 marker genes, 217 marker sets)
-Methyloversatilis	Methyloversatilis (6 genomes, 1297 marker genes, 270 marker sets)
-Methylovorus	Methylovorus (2 genomes, 1496 marker genes, 132 marker sets)
-Microbacterium	Microbacterium (11 genomes, 623 marker genes, 280 marker sets)
-Microcoleus	Microcoleus (2 genomes, 1191 marker genes, 754 marker sets)
-Micromonospora	Micromonospora (5 genomes, 921 marker genes, 349 marker sets)
-Microvirga	Microvirga (2 genomes, 1319 marker genes, 353 marker sets)
-Mobiluncus	Mobiluncus (8 genomes, 830 marker genes, 222 marker sets)
-Moorella	Moorella (2 genomes, 1125 marker genes, 231 marker sets)
-Moraxella	Moraxella (10 genomes, 915 marker genes, 523 marker sets)
-Morganella	Morganella (2 genomes, 1883 marker genes, 217 marker sets)
-Mycobacterium	Mycobacterium (100 genomes, 693 marker genes, 300 marker sets)
-Mycoplasma	Mycoplasma (83 genomes, 226 marker genes, 133 marker sets)
-Myroides	Myroides (7 genomes, 948 marker genes, 335 marker sets)
-Natrialba	Natrialba (3 genomes, 716 marker genes, 277 marker sets)
-Natrinema	Natrinema (3 genomes, 796 marker genes, 297 marker sets)
-Natronobacterium	Natronobacterium (2 genomes, 1012 marker genes, 271 marker sets)
-Natronorubrum	Natronorubrum (2 genomes, 1039 marker genes, 332 marker sets)
-Neisseria	Neisseria (47 genomes, 887 marker genes, 501 marker sets)
-Neorickettsia	Neorickettsia (2 genomes, 678 marker genes, 16 marker sets)
-Nesterenkonia	Nesterenkonia (2 genomes, 929 marker genes, 286 marker sets)
-Niabella	Niabella (2 genomes, 1123 marker genes, 403 marker sets)
-Nisaea	Nisaea (2 genomes, 1230 marker genes, 423 marker sets)
-Nitratireductor	Nitratireductor (3 genomes, 1196 marker genes, 283 marker sets)
-Nitratiruptor	Nitratiruptor (2 genomes, 1056 marker genes, 138 marker sets)
-Nitrobacter	Nitrobacter (3 genomes, 1233 marker genes, 239 marker sets)
-Nitrosococcus	Nitrosococcus (2 genomes, 1342 marker genes, 283 marker sets)
-Nitrosomonas	Nitrosomonas (5 genomes, 957 marker genes, 324 marker sets)
-Nitrosospira	Nitrosospira (2 genomes, 1303 marker genes, 242 marker sets)
-Nocardia	Nocardia (6 genomes, 799 marker genes, 372 marker sets)
-Nocardioides	Nocardioides (8 genomes, 683 marker genes, 299 marker sets)
-Nocardiopsis	Nocardiopsis (4 genomes, 1007 marker genes, 327 marker sets)
-Nostoc	Nostoc (5 genomes, 995 marker genes, 585 marker sets)
-Novosphingobium	Novosphingobium (5 genomes, 907 marker genes, 296 marker sets)
-Oceanicaulis	Oceanicaulis (2 genomes, 1398 marker genes, 175 marker sets)
-Oceanicola	Oceanicola (4 genomes, 998 marker genes, 439 marker sets)
-Oceanimonas	Oceanimonas (3 genomes, 1478 marker genes, 267 marker sets)
-Oceanobacillus	Oceanobacillus (2 genomes, 1474 marker genes, 211 marker sets)
-Oceanospirillum	Oceanospirillum (2 genomes, 1479 marker genes, 371 marker sets)
-Ochrobactrum	Ochrobactrum (4 genomes, 1412 marker genes, 260 marker sets)
-Octadecabacter	Octadecabacter (2 genomes, 1308 marker genes, 284 marker sets)
-Odoribacter	Odoribacter (2 genomes, 1031 marker genes, 350 marker sets)
-Oenococcus	Oenococcus (13 genomes, 679 marker genes, 136 marker sets)
-Oligella	Oligella (2 genomes, 1242 marker genes, 186 marker sets)
-Oligotropha	Oligotropha (2 genomes, 1592 marker genes, 192 marker sets)
-Olleya	Olleya (2 genomes, 1165 marker genes, 249 marker sets)
-Olsenella	Olsenella (2 genomes, 781 marker genes, 213 marker sets)
-Oribacterium	Oribacterium (5 genomes, 555 marker genes, 211 marker sets)
-Orientia	Orientia (2 genomes, 651 marker genes, 94 marker sets)
-Ornithobacterium	Ornithobacterium (2 genomes, 1172 marker genes, 138 marker sets)
-Oscillatoria	Oscillatoria (3 genomes, 1076 marker genes, 673 marker sets)
-Oxalobacter	Oxalobacter (2 genomes, 1179 marker genes, 133 marker sets)
-Paenibacillus	Paenibacillus (33 genomes, 473 marker genes, 180 marker sets)
-Pantoea	Pantoea (10 genomes, 1403 marker genes, 316 marker sets)
-Parabacteroides	Parabacteroides (6 genomes, 970 marker genes, 371 marker sets)
-Parachlamydia	Parachlamydia (2 genomes, 1064 marker genes, 203 marker sets)
-Paracoccus	Paracoccus (8 genomes, 917 marker genes, 340 marker sets)
-Paraprevotella	Paraprevotella (2 genomes, 1113 marker genes, 229 marker sets)
-Parascardovia	Parascardovia (2 genomes, 908 marker genes, 87 marker sets)
-Pasteurella	Pasteurella (8 genomes, 1083 marker genes, 458 marker sets)
-Patulibacter	Patulibacter (2 genomes, 1012 marker genes, 347 marker sets)
-Pectobacterium	Pectobacterium (5 genomes, 1705 marker genes, 291 marker sets)
-Pediococcus	Pediococcus (7 genomes, 664 marker genes, 140 marker sets)
-Pedobacter	Pedobacter (5 genomes, 742 marker genes, 322 marker sets)
-Pelobacter	Pelobacter (2 genomes, 958 marker genes, 487 marker sets)
-Pelodictyon	Pelodictyon (2 genomes, 1031 marker genes, 227 marker sets)
-Pelosinus	Pelosinus (3 genomes, 1539 marker genes, 333 marker sets)
-Peptoniphilus	Peptoniphilus (7 genomes, 533 marker genes, 231 marker sets)
-Peptostreptococcus	Peptostreptococcus (3 genomes, 839 marker genes, 240 marker sets)
-Persephonella	Persephonella (3 genomes, 1036 marker genes, 256 marker sets)
-Phaeobacter	Phaeobacter (8 genomes, 1087 marker genes, 310 marker sets)
-Photobacterium	Photobacterium (6 genomes, 1105 marker genes, 326 marker sets)
-Photorhabdus	Photorhabdus (3 genomes, 1648 marker genes, 281 marker sets)
-Planctomyces	Planctomyces (3 genomes, 790 marker genes, 552 marker sets)
-Planktothrix	Planktothrix (6 genomes, 1307 marker genes, 425 marker sets)
-Planococcus	Planococcus (2 genomes, 1321 marker genes, 253 marker sets)
-Pleomorphomonas	Pleomorphomonas (2 genomes, 1410 marker genes, 316 marker sets)
-Pleurocapsa	Pleurocapsa (2 genomes, 1138 marker genes, 783 marker sets)
-Polaribacter	Polaribacter (3 genomes, 942 marker genes, 301 marker sets)
-Polaromonas	Polaromonas (4 genomes, 1001 marker genes, 336 marker sets)
-Polynucleobacter	Polynucleobacter (3 genomes, 968 marker genes, 106 marker sets)
-Pontibacillus	Pontibacillus (2 genomes, 1303 marker genes, 324 marker sets)
-Pontibacter	Pontibacter (2 genomes, 1139 marker genes, 379 marker sets)
-Porphyromonas	Porphyromonas (18 genomes, 569 marker genes, 346 marker sets)
-Prevotella	Prevotella (65 genomes, 522 marker genes, 281 marker sets)
-Prochlorococcus	Prochlorococcus (18 genomes, 806 marker genes, 240 marker sets)
-Promicromonospora	Promicromonospora (2 genomes, 1247 marker genes, 525 marker sets)
-Propionibacterium	Propionibacterium (35 genomes, 632 marker genes, 302 marker sets)
-Propionimicrobium	Propionimicrobium (2 genomes, 1112 marker genes, 105 marker sets)
-Proteus	Proteus (2 genomes, 1888 marker genes, 231 marker sets)
-Providencia	Providencia (6 genomes, 1517 marker genes, 302 marker sets)
-Pseudanabaena	Pseudanabaena (2 genomes, 1172 marker genes, 781 marker sets)
-Pseudoalteromonas	Pseudoalteromonas (20 genomes, 847 marker genes, 396 marker sets)
-Pseudobutyrivibrio	Pseudobutyrivibrio (5 genomes, 873 marker genes, 228 marker sets)
-Pseudoclavibacter	Pseudoclavibacter (2 genomes, 863 marker genes, 298 marker sets)
-Pseudogulbenkiania	Pseudogulbenkiania (3 genomes, 1447 marker genes, 267 marker sets)
-Pseudomonas	Pseudomonas (182 genomes, 833 marker genes, 312 marker sets)
-Pseudonocardia	Pseudonocardia (4 genomes, 796 marker genes, 343 marker sets)
-Pseudovibrio	Pseudovibrio (2 genomes, 1687 marker genes, 338 marker sets)
-Pseudoxanthomonas	Pseudoxanthomonas (5 genomes, 1159 marker genes, 369 marker sets)
-Psychrobacter	Psychrobacter (6 genomes, 1010 marker genes, 372 marker sets)
-Psychroflexus	Psychroflexus (2 genomes, 1118 marker genes, 211 marker sets)
-Psychromonas	Psychromonas (5 genomes, 1062 marker genes, 326 marker sets)
-Pyrobaculum	Pyrobaculum (6 genomes, 594 marker genes, 217 marker sets)
-Pyrococcus	Pyrococcus (6 genomes, 654 marker genes, 266 marker sets)
-Rahnella	Rahnella (2 genomes, 1981 marker genes, 296 marker sets)
-Ralstonia	Ralstonia (14 genomes, 893 marker genes, 294 marker sets)
-Rheinheimera	Rheinheimera (4 genomes, 1282 marker genes, 378 marker sets)
-Rhizobium	Rhizobium (40 genomes, 863 marker genes, 345 marker sets)
-Rhodanobacter	Rhodanobacter (3 genomes, 1566 marker genes, 246 marker sets)
-Rhodobacter	Rhodobacter (8 genomes, 992 marker genes, 372 marker sets)
-Rhodococcus	Rhodococcus (14 genomes, 715 marker genes, 302 marker sets)
-Rhodonellum	Rhodonellum (2 genomes, 1473 marker genes, 372 marker sets)
-Rhodopirellula	Rhodopirellula (3 genomes, 1048 marker genes, 661 marker sets)
-Rhodopseudomonas	Rhodopseudomonas (7 genomes, 1180 marker genes, 388 marker sets)
-Rhodospirillum	Rhodospirillum (3 genomes, 1208 marker genes, 514 marker sets)
-Rhodothermus	Rhodothermus (3 genomes, 1379 marker genes, 216 marker sets)
-Rickettsia	Rickettsia (43 genomes, 662 marker genes, 110 marker sets)
-Riemerella	Riemerella (6 genomes, 888 marker genes, 396 marker sets)
-Roseburia	Roseburia (2 genomes, 975 marker genes, 303 marker sets)
-Roseiflexus	Roseiflexus (2 genomes, 1231 marker genes, 441 marker sets)
-Roseobacter	Roseobacter (7 genomes, 850 marker genes, 348 marker sets)
-Roseomonas	Roseomonas (2 genomes, 1576 marker genes, 318 marker sets)
-Roseovarius	Roseovarius (3 genomes, 1134 marker genes, 423 marker sets)
-Rothia	Rothia (6 genomes, 884 marker genes, 217 marker sets)
-Rubrivivax	Rubrivivax (3 genomes, 1586 marker genes, 343 marker sets)
-Rubrobacter	Rubrobacter (2 genomes, 991 marker genes, 269 marker sets)
-Ruegeria	Ruegeria (7 genomes, 996 marker genes, 358 marker sets)
-Ruminococcus	Ruminococcus (13 genomes, 436 marker genes, 242 marker sets)
-Runella	Runella (3 genomes, 1097 marker genes, 525 marker sets)
-Saccharibacillus	Saccharibacillus (2 genomes, 1247 marker genes, 331 marker sets)
-Saccharomonospora	Saccharomonospora (8 genomes, 788 marker genes, 337 marker sets)
-Salinicoccus	Salinicoccus (2 genomes, 1179 marker genes, 206 marker sets)
-Salinimicrobium	Salinimicrobium (2 genomes, 1195 marker genes, 260 marker sets)
-Salinispora	Salinispora (45 genomes, 1031 marker genes, 284 marker sets)
-Salmonella	Salmonella (21 genomes, 1529 marker genes, 266 marker sets)
-Saprospira	Saprospira (2 genomes, 1147 marker genes, 326 marker sets)
-Sediminibacterium	Sediminibacterium (3 genomes, 992 marker genes, 328 marker sets)
-Selenomonas	Selenomonas (21 genomes, 710 marker genes, 294 marker sets)
-Serratia	Serratia (13 genomes, 985 marker genes, 293 marker sets)
-Shewanella	Shewanella (26 genomes, 989 marker genes, 339 marker sets)
-Shigella	Shigella (34 genomes, 1437 marker genes, 348 marker sets)
-Slackia	Slackia (4 genomes, 616 marker genes, 193 marker sets)
-Solirubrobacter	Solirubrobacter (2 genomes, 995 marker genes, 398 marker sets)
-Solobacterium	Solobacterium (2 genomes, 877 marker genes, 170 marker sets)
-Sphaerochaeta	Sphaerochaeta (3 genomes, 685 marker genes, 216 marker sets)
-Sphingobacterium	Sphingobacterium (2 genomes, 996 marker genes, 521 marker sets)
-Sphingobium	Sphingobium (3 genomes, 1179 marker genes, 403 marker sets)
-Sphingomonas	Sphingomonas (11 genomes, 713 marker genes, 351 marker sets)
-Sphingopyxis	Sphingopyxis (2 genomes, 1195 marker genes, 382 marker sets)
-Spirochaeta	Spirochaeta (8 genomes, 487 marker genes, 211 marker sets)
-Spirosoma	Spirosoma (4 genomes, 993 marker genes, 460 marker sets)
-Sporosarcina	Sporosarcina (3 genomes, 999 marker genes, 269 marker sets)
-Staphylococcus	Staphylococcus (60 genomes, 773 marker genes, 178 marker sets)
-Staphylothermus	Staphylothermus (2 genomes, 676 marker genes, 104 marker sets)
-Stenotrophomonas	Stenotrophomonas (10 genomes, 1276 marker genes, 380 marker sets)
-Streptococcus	Streptococcus (226 genomes, 551 marker genes, 259 marker sets)
-Streptomyces	Streptomyces (58 genomes, 506 marker genes, 264 marker sets)
-Sulfitobacter	Sulfitobacter (4 genomes, 1140 marker genes, 294 marker sets)
-Sulfobacillus	Sulfobacillus (3 genomes, 986 marker genes, 278 marker sets)
-Sulfolobus	Sulfolobus (15 genomes, 621 marker genes, 152 marker sets)
-Sulfurihydrogenibium	Sulfurihydrogenibium (3 genomes, 994 marker genes, 341 marker sets)
-Sulfurimonas	Sulfurimonas (3 genomes, 853 marker genes, 245 marker sets)
-Sulfurospirillum	Sulfurospirillum (3 genomes, 929 marker genes, 240 marker sets)
-Sutterella	Sutterella (3 genomes, 935 marker genes, 232 marker sets)
-Synechococcus	Synechococcus (25 genomes, 554 marker genes, 425 marker sets)
-Synechocystis	Synechocystis (5 genomes, 1099 marker genes, 794 marker sets)
-Tannerella	Tannerella (2 genomes, 822 marker genes, 441 marker sets)
-Taylorella	Taylorella (4 genomes, 1069 marker genes, 71 marker sets)
-Tenacibaculum	Tenacibaculum (2 genomes, 1057 marker genes, 272 marker sets)
-Teredinibacter	Teredinibacter (10 genomes, 1162 marker genes, 360 marker sets)
-Tetragenococcus	Tetragenococcus (2 genomes, 953 marker genes, 183 marker sets)
-Thalassospira	Thalassospira (3 genomes, 1406 marker genes, 326 marker sets)
-Thauera	Thauera (6 genomes, 1175 marker genes, 334 marker sets)
-Thermacetogenium	Thermacetogenium (2 genomes, 1344 marker genes, 157 marker sets)
-Thermaerobacter	Thermaerobacter (2 genomes, 1204 marker genes, 181 marker sets)
-Thermanaerovibrio	Thermanaerovibrio (2 genomes, 1136 marker genes, 117 marker sets)
-Thermoanaerobacter	Thermoanaerobacter (13 genomes, 976 marker genes, 195 marker sets)
-Thermoanaerobacterium	Thermoanaerobacterium (4 genomes, 1117 marker genes, 147 marker sets)
-Thermobifida	Thermobifida (2 genomes, 1421 marker genes, 225 marker sets)
-Thermococcus	Thermococcus (9 genomes, 552 marker genes, 286 marker sets)
-Thermocrinis	Thermocrinis (2 genomes, 941 marker genes, 515 marker sets)
-Thermocrispum	Thermocrispum (2 genomes, 1264 marker genes, 288 marker sets)
-Thermodesulfatator	Thermodesulfatator (2 genomes, 1149 marker genes, 333 marker sets)
-Thermodesulfobacterium	Thermodesulfobacterium (3 genomes, 960 marker genes, 243 marker sets)
-Thermodesulfovibrio	Thermodesulfovibrio (3 genomes, 999 marker genes, 215 marker sets)
-Thermogladius	Thermogladius (2 genomes, 711 marker genes, 60 marker sets)
-Thermoplasma	Thermoplasma (2 genomes, 733 marker genes, 167 marker sets)
-Thermoproteus	Thermoproteus (3 genomes, 600 marker genes, 281 marker sets)
-Thermosipho	Thermosipho (2 genomes, 1009 marker genes, 148 marker sets)
-Thermotoga	Thermotoga (8 genomes, 768 marker genes, 325 marker sets)
-Thermus	Thermus (14 genomes, 841 marker genes, 311 marker sets)
-Thioalkalimicrobium	Thioalkalimicrobium (2 genomes, 1175 marker genes, 103 marker sets)
-Thioalkalivibrio	Thioalkalivibrio (70 genomes, 1059 marker genes, 270 marker sets)
-Thiobacillus	Thiobacillus (3 genomes, 1205 marker genes, 209 marker sets)
-Thiomicrospira	Thiomicrospira (8 genomes, 954 marker genes, 243 marker sets)
-Thiomonas	Thiomonas (3 genomes, 1202 marker genes, 366 marker sets)
-Thiothrix	Thiothrix (4 genomes, 1003 marker genes, 417 marker sets)
-Tolumonas	Tolumonas (2 genomes, 1431 marker genes, 200 marker sets)
-Treponema	Treponema (28 genomes, 326 marker genes, 173 marker sets)
-Turicibacter	Turicibacter (2 genomes, 1183 marker genes, 236 marker sets)
-Ureaplasma	Ureaplasma (15 genomes, 372 marker genes, 51 marker sets)
-Variovorax	Variovorax (7 genomes, 1114 marker genes, 351 marker sets)
-Veillonella	Veillonella (13 genomes, 757 marker genes, 219 marker sets)
-Verrucomicrobium	Verrucomicrobium (3 genomes, 697 marker genes, 466 marker sets)
-Vibrio	Vibrio (70 genomes, 1084 marker genes, 381 marker sets)
-Vulcanisaeta	Vulcanisaeta (2 genomes, 713 marker genes, 173 marker sets)
-Weissella	Weissella (6 genomes, 534 marker genes, 171 marker sets)
-Wigglesworthia	Wigglesworthia (2 genomes, 679 marker genes, 9 marker sets)
-Wohlfahrtiimonas	Wohlfahrtiimonas (2 genomes, 1335 marker genes, 78 marker sets)
-Wolbachia	Wolbachia (8 genomes, 427 marker genes, 275 marker sets)
-Xanthobacter	Xanthobacter (3 genomes, 1394 marker genes, 374 marker sets)
-Xanthomonas	Xanthomonas (16 genomes, 1163 marker genes, 401 marker sets)
-Xenorhabdus	Xenorhabdus (2 genomes, 1608 marker genes, 267 marker sets)
-Xylella	Xylella (10 genomes, 1207 marker genes, 178 marker sets)
-Yersinia	Yersinia (35 genomes, 1383 marker genes, 341 marker sets)
-Zymomonas	Zymomonas (3 genomes, 1142 marker genes, 133 marker sets)