--- a/tool-data/species.loc.sample	Tue Jun 17 12:58:00 2025 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,510 +0,0 @@
-# File generated by format_taxon_list.py script
-# taxon	description
-Acetobacter pasteurianus	Acetobacter pasteurianus (9 genomes, 1384 marker genes, 160 marker sets)
-Achromobacter piechaudii	Achromobacter piechaudii (2 genomes, 1606 marker genes, 428 marker sets)
-Achromobacter xylosoxidans	Achromobacter xylosoxidans (2 genomes, 1503 marker genes, 445 marker sets)
-Acidaminococcus intestini	Acidaminococcus intestini (2 genomes, 1109 marker genes, 140 marker sets)
-Acidithiobacillus caldus	Acidithiobacillus caldus (2 genomes, 1196 marker genes, 153 marker sets)
-Acidithiobacillus ferrooxidans	Acidithiobacillus ferrooxidans (2 genomes, 1293 marker genes, 128 marker sets)
-Acidovorax avenae	Acidovorax avenae (2 genomes, 1633 marker genes, 327 marker sets)
-Acinetobacter baumanni	Acinetobacter baumanni (5 genomes, 1413 marker genes, 231 marker sets)
-Acinetobacter baumannii	Acinetobacter baumannii (20 genomes, 1018 marker genes, 298 marker sets)
-Acinetobacter baylyi	Acinetobacter baylyi (2 genomes, 1608 marker genes, 195 marker sets)
-Acinetobacter calcoaceticus	Acinetobacter calcoaceticus (5 genomes, 1444 marker genes, 252 marker sets)
-Acinetobacter johnsonii	Acinetobacter johnsonii (2 genomes, 1439 marker genes, 204 marker sets)
-Acinetobacter junii	Acinetobacter junii (4 genomes, 1336 marker genes, 222 marker sets)
-Acinetobacter lwoffii	Acinetobacter lwoffii (3 genomes, 1363 marker genes, 221 marker sets)
-Acinetobacter nosocomialis	Acinetobacter nosocomialis (2 genomes, 1542 marker genes, 214 marker sets)
-Acinetobacter radioresistens	Acinetobacter radioresistens (5 genomes, 1354 marker genes, 199 marker sets)
-Actinobacillus pleuropneumoniae	Actinobacillus pleuropneumoniae (13 genomes, 1332 marker genes, 210 marker sets)
-Actinobaculum schaalii	Actinobaculum schaalii (2 genomes, 951 marker genes, 128 marker sets)
-Actinomyces graevenitzii	Actinomyces graevenitzii (2 genomes, 1014 marker genes, 144 marker sets)
-Actinomyces naeslundii	Actinomyces naeslundii (2 genomes, 1068 marker genes, 299 marker sets)
-Actinomyces neuii	Actinomyces neuii (2 genomes, 1053 marker genes, 132 marker sets)
-Actinomyces odontolyticus	Actinomyces odontolyticus (2 genomes, 1061 marker genes, 179 marker sets)
-Aeromonas hydrophila	Aeromonas hydrophila (3 genomes, 1847 marker genes, 312 marker sets)
-Aeromonas veronii	Aeromonas veronii (6 genomes, 1752 marker genes, 329 marker sets)
-Aggregatibacter actinomycetemcomitans	Aggregatibacter actinomycetemcomitans (10 genomes, 1164 marker genes, 217 marker sets)
-Agrobacterium tumefaciens	Agrobacterium tumefaciens (2 genomes, 1574 marker genes, 278 marker sets)
-Alicycliphilus denitrificans	Alicycliphilus denitrificans (2 genomes, 1650 marker genes, 258 marker sets)
-Alicyclobacillus acidocaldarius	Alicyclobacillus acidocaldarius (2 genomes, 1329 marker genes, 157 marker sets)
-Alloscardovia omnicolens	Alloscardovia omnicolens (2 genomes, 950 marker genes, 116 marker sets)
-Alteromonas macleodii	Alteromonas macleodii (4 genomes, 1539 marker genes, 274 marker sets)
-Amycolatopsis mediterranei	Amycolatopsis mediterranei (3 genomes, 1557 marker genes, 526 marker sets)
-Anabaena circinalis	Anabaena circinalis (2 genomes, 1357 marker genes, 362 marker sets)
-Anaerococcus prevotii	Anaerococcus prevotii (2 genomes, 900 marker genes, 143 marker sets)
-Anaeromyxobacter dehalogenans	Anaeromyxobacter dehalogenans (2 genomes, 1441 marker genes, 335 marker sets)
-Anoxybacillus flavithermus	Anoxybacillus flavithermus (2 genomes, 1366 marker genes, 163 marker sets)
-Archaeoglobus fulgidus	Archaeoglobus fulgidus (2 genomes, 975 marker genes, 111 marker sets)
-Arcobacter butzleri	Arcobacter butzleri (4 genomes, 1067 marker genes, 144 marker sets)
-Arthrobacter nicotinovorans	Arthrobacter nicotinovorans (2 genomes, 1382 marker genes, 287 marker sets)
-Arthrospira platensis	Arthrospira platensis (2 genomes, 1432 marker genes, 419 marker sets)
-Atopobium vaginae	Atopobium vaginae (2 genomes, 714 marker genes, 165 marker sets)
-Azotobacter vinelandii	Azotobacter vinelandii (3 genomes, 1930 marker genes, 269 marker sets)
-Bacillus amyloliquefaciens	Bacillus amyloliquefaciens (9 genomes, 1568 marker genes, 226 marker sets)
-Bacillus anthracis	Bacillus anthracis (11 genomes, 1465 marker genes, 354 marker sets)
-Bacillus cereus	Bacillus cereus (20 genomes, 1114 marker genes, 319 marker sets)
-Bacillus coagulans	Bacillus coagulans (4 genomes, 1365 marker genes, 245 marker sets)
-Bacillus licheniformis	Bacillus licheniformis (4 genomes, 1711 marker genes, 246 marker sets)
-Bacillus megaterium	Bacillus megaterium (3 genomes, 1495 marker genes, 292 marker sets)
-Bacillus methanolicus	Bacillus methanolicus (2 genomes, 1444 marker genes, 206 marker sets)
-Bacillus pumilus	Bacillus pumilus (2 genomes, 1707 marker genes, 218 marker sets)
-Bacillus subtilis	Bacillus subtilis (14 genomes, 1489 marker genes, 247 marker sets)
-Bacillus thuringiensis	Bacillus thuringiensis (11 genomes, 1205 marker genes, 357 marker sets)
-Bacteroides caccae	Bacteroides caccae (2 genomes, 1239 marker genes, 256 marker sets)
-Bacteroides dorei	Bacteroides dorei (4 genomes, 1172 marker genes, 271 marker sets)
-Bacteroides eggerthii	Bacteroides eggerthii (2 genomes, 1171 marker genes, 205 marker sets)
-Bacteroides fragilis	Bacteroides fragilis (10 genomes, 1128 marker genes, 303 marker sets)
-Bacteroides massiliensis	Bacteroides massiliensis (2 genomes, 1340 marker genes, 274 marker sets)
-Bacteroides ovatus	Bacteroides ovatus (6 genomes, 1115 marker genes, 317 marker sets)
-Bacteroides stercoris	Bacteroides stercoris (2 genomes, 1202 marker genes, 210 marker sets)
-Bacteroides thetaiotaomicron	Bacteroides thetaiotaomicron (6 genomes, 1177 marker genes, 313 marker sets)
-Bacteroides uniformis	Bacteroides uniformis (2 genomes, 1214 marker genes, 253 marker sets)
-Bacteroides vulgatus	Bacteroides vulgatus (5 genomes, 1162 marker genes, 307 marker sets)
-Bacteroides xylanisolvens	Bacteroides xylanisolvens (12 genomes, 1025 marker genes, 325 marker sets)
-Bankia setacea	Bankia setacea (2 genomes, 1388 marker genes, 332 marker sets)
-Bartonella clarridgeiae	Bartonella clarridgeiae (2 genomes, 990 marker genes, 52 marker sets)
-Bartonella doshiae	Bartonella doshiae (2 genomes, 1022 marker genes, 73 marker sets)
-Bartonella elizabethae	Bartonella elizabethae (3 genomes, 1021 marker genes, 88 marker sets)
-Bartonella grahamii	Bartonella grahamii (2 genomes, 1010 marker genes, 95 marker sets)
-Bartonella quintana	Bartonella quintana (2 genomes, 945 marker genes, 55 marker sets)
-Bartonella tamiae	Bartonella tamiae (2 genomes, 1379 marker genes, 94 marker sets)
-Bartonella vinsonii	Bartonella vinsonii (4 genomes, 964 marker genes, 71 marker sets)
-Bartonella washoensis	Bartonella washoensis (2 genomes, 1014 marker genes, 79 marker sets)
-Bdellovibrio bacteriovorus	Bdellovibrio bacteriovorus (2 genomes, 1015 marker genes, 305 marker sets)
-Bifidobacterium adolescentis	Bifidobacterium adolescentis (3 genomes, 886 marker genes, 116 marker sets)
-Bifidobacterium animalis	Bifidobacterium animalis (9 genomes, 871 marker genes, 113 marker sets)
-Bifidobacterium bifidum	Bifidobacterium bifidum (5 genomes, 952 marker genes, 140 marker sets)
-Bifidobacterium breve	Bifidobacterium breve (6 genomes, 871 marker genes, 166 marker sets)
-Bifidobacterium dentium	Bifidobacterium dentium (3 genomes, 991 marker genes, 156 marker sets)
-Bifidobacterium longum	Bifidobacterium longum (15 genomes, 750 marker genes, 214 marker sets)
-Bifidobacterium pseudolongum	Bifidobacterium pseudolongum (2 genomes, 933 marker genes, 123 marker sets)
-Blautia producta	Blautia producta (2 genomes, 1444 marker genes, 376 marker sets)
-Blautia wexlerae	Blautia wexlerae (2 genomes, 1092 marker genes, 270 marker sets)
-Bordetella holmesii	Bordetella holmesii (2 genomes, 1523 marker genes, 215 marker sets)
-Bordetella pertussis	Bordetella pertussis (2 genomes, 1599 marker genes, 225 marker sets)
-Borrelia afzelii	Borrelia afzelii (2 genomes, 598 marker genes, 23 marker sets)
-Borrelia burgdorferi	Borrelia burgdorferi (7 genomes, 567 marker genes, 36 marker sets)
-Borrelia garinii	Borrelia garinii (3 genomes, 596 marker genes, 51 marker sets)
-Brachyspira hyodysenteriae	Brachyspira hyodysenteriae (2 genomes, 1143 marker genes, 201 marker sets)
-Brachyspira pilosicoli	Brachyspira pilosicoli (4 genomes, 951 marker genes, 213 marker sets)
-Bradyrhizobium elkanii	Bradyrhizobium elkanii (6 genomes, 1117 marker genes, 415 marker sets)
-Bradyrhizobium japonicum	Bradyrhizobium japonicum (9 genomes, 1153 marker genes, 389 marker sets)
-Brevibacillus laterosporus	Brevibacillus laterosporus (2 genomes, 1538 marker genes, 311 marker sets)
-Brucella abortus	Brucella abortus (20 genomes, 1513 marker genes, 206 marker sets)
-Brucella canis	Brucella canis (7 genomes, 1561 marker genes, 163 marker sets)
-Brucella ceti	Brucella ceti (4 genomes, 1586 marker genes, 299 marker sets)
-Brucella melitensis	Brucella melitensis (20 genomes, 1435 marker genes, 270 marker sets)
-Brucella ovis	Brucella ovis (9 genomes, 1599 marker genes, 181 marker sets)
-Brucella pinnipedialis	Brucella pinnipedialis (2 genomes, 1625 marker genes, 189 marker sets)
-Brucella suis	Brucella suis (16 genomes, 1524 marker genes, 276 marker sets)
-Buchnera aphidicola	Buchnera aphidicola (10 genomes, 380 marker genes, 35 marker sets)
-Burkholderia cenocepacia	Burkholderia cenocepacia (5 genomes, 1585 marker genes, 398 marker sets)
-Burkholderia cepacia	Burkholderia cepacia (5 genomes, 1353 marker genes, 330 marker sets)
-Burkholderia mallei	Burkholderia mallei (9 genomes, 1503 marker genes, 397 marker sets)
-Burkholderia mimosarum	Burkholderia mimosarum (2 genomes, 1813 marker genes, 442 marker sets)
-Burkholderia multivorans	Burkholderia multivorans (4 genomes, 1688 marker genes, 361 marker sets)
-Burkholderia pseudomallei	Burkholderia pseudomallei (12 genomes, 1626 marker genes, 455 marker sets)
-Butyrivibrio fibrisolvens	Butyrivibrio fibrisolvens (4 genomes, 1083 marker genes, 302 marker sets)
-Butyrivibrio proteoclasticus	Butyrivibrio proteoclasticus (2 genomes, 1016 marker genes, 327 marker sets)
-Caldicellulosiruptor kristjanssonii	Caldicellulosiruptor kristjanssonii (3 genomes, 1326 marker genes, 159 marker sets)
-Campylobacter coli	Campylobacter coli (20 genomes, 955 marker genes, 188 marker sets)
-Campylobacter curvus	Campylobacter curvus (2 genomes, 1090 marker genes, 92 marker sets)
-Campylobacter fetus	Campylobacter fetus (2 genomes, 1143 marker genes, 80 marker sets)
-Campylobacter jejuni	Campylobacter jejuni (20 genomes, 903 marker genes, 161 marker sets)
-Campylobacter showae	Campylobacter showae (2 genomes, 1098 marker genes, 118 marker sets)
-Campylobacter upsaliensis	Campylobacter upsaliensis (3 genomes, 1032 marker genes, 103 marker sets)
-Candidatus Pelagibacter ubique	Candidatus Pelagibacter ubique (10 genomes, 779 marker genes, 128 marker sets)
-Candidatus Pelagibacter-like SAR11	Candidatus Pelagibacter-like SAR11 (3 genomes, 911 marker genes, 76 marker sets)
-Capnocytophaga ochracea	Capnocytophaga ochracea (3 genomes, 1077 marker genes, 205 marker sets)
-Caulobacter crescentus	Caulobacter crescentus (2 genomes, 1670 marker genes, 221 marker sets)
-Cellulomonas flavigena	Cellulomonas flavigena (2 genomes, 1110 marker genes, 325 marker sets)
-Chlamydia muridarum	Chlamydia muridarum (3 genomes, 683 marker genes, 35 marker sets)
-Chlamydia psittaci	Chlamydia psittaci (20 genomes, 613 marker genes, 74 marker sets)
-Chlamydia trachomatis	Chlamydia trachomatis (20 genomes, 641 marker genes, 41 marker sets)
-Chlamydophila pneumoniae	Chlamydophila pneumoniae (5 genomes, 683 marker genes, 57 marker sets)
-Chlamydophila psittaci	Chlamydophila psittaci (7 genomes, 706 marker genes, 40 marker sets)
-Chlorobium phaeobacteroides	Chlorobium phaeobacteroides (2 genomes, 1081 marker genes, 255 marker sets)
-Citrobacter freundii	Citrobacter freundii (3 genomes, 1937 marker genes, 327 marker sets)
-Clavibacter michiganensis	Clavibacter michiganensis (2 genomes, 1152 marker genes, 228 marker sets)
-Clostridium acetobutylicum	Clostridium acetobutylicum (3 genomes, 1498 marker genes, 242 marker sets)
-Clostridium beijerinckii	Clostridium beijerinckii (2 genomes, 1312 marker genes, 318 marker sets)
-Clostridium bolteae	Clostridium bolteae (5 genomes, 1147 marker genes, 316 marker sets)
-Clostridium botulinum	Clostridium botulinum (15 genomes, 653 marker genes, 197 marker sets)
-Clostridium butyricum	Clostridium butyricum (3 genomes, 1300 marker genes, 285 marker sets)
-Clostridium clariflavum	Clostridium clariflavum (2 genomes, 1344 marker genes, 273 marker sets)
-Clostridium clostridioforme	Clostridium clostridioforme (7 genomes, 995 marker genes, 304 marker sets)
-Clostridium difficile	Clostridium difficile (20 genomes, 1098 marker genes, 329 marker sets)
-Clostridium glycolicum	Clostridium glycolicum (2 genomes, 1385 marker genes, 238 marker sets)
-Clostridium kluyveri	Clostridium kluyveri (2 genomes, 1377 marker genes, 212 marker sets)
-Clostridium pasteurianum	Clostridium pasteurianum (2 genomes, 1184 marker genes, 276 marker sets)
-Clostridium perfringens	Clostridium perfringens (3 genomes, 1152 marker genes, 185 marker sets)
-Clostridium sporogenes	Clostridium sporogenes (2 genomes, 1302 marker genes, 242 marker sets)
-Clostridium symbiosum	Clostridium symbiosum (2 genomes, 1222 marker genes, 322 marker sets)
-Clostridium thermocellum	Clostridium thermocellum (5 genomes, 1325 marker genes, 239 marker sets)
-Comamonas testosteroni	Comamonas testosteroni (3 genomes, 1563 marker genes, 349 marker sets)
-Corynebacterium accolens	Corynebacterium accolens (2 genomes, 1192 marker genes, 206 marker sets)
-Corynebacterium aurimucosum	Corynebacterium aurimucosum (2 genomes, 1240 marker genes, 186 marker sets)
-Corynebacterium diphtheriae	Corynebacterium diphtheriae (15 genomes, 1041 marker genes, 134 marker sets)
-Corynebacterium efficiens	Corynebacterium efficiens (2 genomes, 1320 marker genes, 210 marker sets)
-Corynebacterium glucuronolyticum	Corynebacterium glucuronolyticum (3 genomes, 1217 marker genes, 176 marker sets)
-Corynebacterium glutamicum	Corynebacterium glutamicum (6 genomes, 1184 marker genes, 228 marker sets)
-Corynebacterium halotolerans	Corynebacterium halotolerans (2 genomes, 1353 marker genes, 183 marker sets)
-Corynebacterium jeikeium	Corynebacterium jeikeium (2 genomes, 1143 marker genes, 157 marker sets)
-Corynebacterium matruchotii	Corynebacterium matruchotii (2 genomes, 1191 marker genes, 181 marker sets)
-Corynebacterium pseudotuberculosis	Corynebacterium pseudotuberculosis (14 genomes, 1001 marker genes, 123 marker sets)
-Corynebacterium ulcerans	Corynebacterium ulcerans (3 genomes, 1221 marker genes, 112 marker sets)
-Corynebacterium urealyticum	Corynebacterium urealyticum (2 genomes, 1146 marker genes, 117 marker sets)
-Coxiella burnetii	Coxiella burnetii (5 genomes, 1047 marker genes, 146 marker sets)
-Cupriavidus metallidurans	Cupriavidus metallidurans (2 genomes, 1706 marker genes, 419 marker sets)
-Cupriavidus necator	Cupriavidus necator (2 genomes, 1517 marker genes, 379 marker sets)
-Cupriavidus taiwanensis	Cupriavidus taiwanensis (3 genomes, 1681 marker genes, 365 marker sets)
-Dechloromonas agitata	Dechloromonas agitata (2 genomes, 1533 marker genes, 220 marker sets)
-Dehalococcoides mccartyi	Dehalococcoides mccartyi (4 genomes, 803 marker genes, 50 marker sets)
-Deinococcus radiodurans	Deinococcus radiodurans (2 genomes, 1383 marker genes, 206 marker sets)
-Delftia acidovorans	Delftia acidovorans (2 genomes, 1757 marker genes, 421 marker sets)
-Desulfovibrio africanus	Desulfovibrio africanus (3 genomes, 1285 marker genes, 284 marker sets)
-Desulfovibrio alaskensis	Desulfovibrio alaskensis (2 genomes, 1327 marker genes, 223 marker sets)
-Desulfovibrio desulfuricans	Desulfovibrio desulfuricans (2 genomes, 941 marker genes, 423 marker sets)
-Desulfovibrio vulgaris	Desulfovibrio vulgaris (3 genomes, 1187 marker genes, 344 marker sets)
-Dickeya dadantii	Dickeya dadantii (3 genomes, 1728 marker genes, 307 marker sets)
-Dorea longicatena	Dorea longicatena (2 genomes, 1005 marker genes, 208 marker sets)
-Edwardsiella tarda	Edwardsiella tarda (2 genomes, 1903 marker genes, 174 marker sets)
-Ehrlichia ruminantium	Ehrlichia ruminantium (3 genomes, 760 marker genes, 58 marker sets)
-Elizabethkingia anophelis	Elizabethkingia anophelis (3 genomes, 1251 marker genes, 240 marker sets)
-Ensifer fredii	Ensifer fredii (2 genomes, 1548 marker genes, 357 marker sets)
-Ensifer medicae	Ensifer medicae (5 genomes, 1601 marker genes, 343 marker sets)
-Ensifer meliloti	Ensifer meliloti (15 genomes, 1320 marker genes, 381 marker sets)
-Enterobacter aerogenes	Enterobacter aerogenes (2 genomes, 2126 marker genes, 298 marker sets)
-Enterobacter cloacae	Enterobacter cloacae (6 genomes, 1787 marker genes, 306 marker sets)
-Enterococcus casseliflavus	Enterococcus casseliflavus (4 genomes, 1174 marker genes, 221 marker sets)
-Enterococcus faecalis	Enterococcus faecalis (20 genomes, 792 marker genes, 298 marker sets)
-Enterococcus faecium	Enterococcus faecium (20 genomes, 885 marker genes, 257 marker sets)
-Enterococcus gallinarum	Enterococcus gallinarum (2 genomes, 1257 marker genes, 191 marker sets)
-Eremococcus coleocola	Eremococcus coleocola (2 genomes, 922 marker genes, 109 marker sets)
-Erwinia amylovora	Erwinia amylovora (3 genomes, 1878 marker genes, 177 marker sets)
-Erwinia pyrifoliae	Erwinia pyrifoliae (2 genomes, 1942 marker genes, 184 marker sets)
-Escherichia coli	Escherichia coli (20 genomes, 1628 marker genes, 307 marker sets)
-Escherichia fergusonii	Escherichia fergusonii (2 genomes, 2134 marker genes, 277 marker sets)
-Eubacterium cellulosolvens	Eubacterium cellulosolvens (2 genomes, 1078 marker genes, 198 marker sets)
-Eubacterium saburreum	Eubacterium saburreum (2 genomes, 1186 marker genes, 223 marker sets)
-Exiguobacterium sibiricum	Exiguobacterium sibiricum (2 genomes, 1429 marker genes, 175 marker sets)
-Exiguobacterium undae	Exiguobacterium undae (2 genomes, 1484 marker genes, 173 marker sets)
-Facklamia hominis	Facklamia hominis (2 genomes, 955 marker genes, 100 marker sets)
-Finegoldia magna	Finegoldia magna (5 genomes, 878 marker genes, 111 marker sets)
-Francisella noatunensis	Francisella noatunensis (6 genomes, 904 marker genes, 235 marker sets)
-Francisella noatunensis noatunensis	Francisella noatunensis noatunensis (2 genomes, 1070 marker genes, 209 marker sets)
-Francisella novicida	Francisella novicida (4 genomes, 1052 marker genes, 152 marker sets)
-Francisella philomiragia	Francisella philomiragia (6 genomes, 1127 marker genes, 132 marker sets)
-Francisella tularensis	Francisella tularensis (20 genomes, 850 marker genes, 176 marker sets)
-Fusobacterium necrophorum	Fusobacterium necrophorum (2 genomes, 1080 marker genes, 117 marker sets)
-Fusobacterium nucleatum	Fusobacterium nucleatum (6 genomes, 884 marker genes, 256 marker sets)
-Gallibacterium anatis	Gallibacterium anatis (2 genomes, 1519 marker genes, 168 marker sets)
-Gardnerella vaginalis	Gardnerella vaginalis (14 genomes, 621 marker genes, 237 marker sets)
-Gemella haemolysans	Gemella haemolysans (2 genomes, 961 marker genes, 126 marker sets)
-Geobacillus debilis	Geobacillus debilis (2 genomes, 1380 marker genes, 195 marker sets)
-Geobacter sulfurreducens	Geobacter sulfurreducens (2 genomes, 1487 marker genes, 199 marker sets)
-Glaciecola agarilytica	Glaciecola agarilytica (2 genomes, 1802 marker genes, 312 marker sets)
-Gluconacetobacter diazotrophicus	Gluconacetobacter diazotrophicus (2 genomes, 1506 marker genes, 190 marker sets)
-Gordonia amicalis	Gordonia amicalis (2 genomes, 1448 marker genes, 324 marker sets)
-Gordonia polyisoprenivorans	Gordonia polyisoprenivorans (3 genomes, 1452 marker genes, 366 marker sets)
-Haemophilus ducreyi	Haemophilus ducreyi (4 genomes, 1128 marker genes, 128 marker sets)
-Haemophilus haemolyticus	Haemophilus haemolyticus (3 genomes, 1281 marker genes, 149 marker sets)
-Haemophilus influenzae	Haemophilus influenzae (17 genomes, 924 marker genes, 157 marker sets)
-Haemophilus parainfluenzae	Haemophilus parainfluenzae (5 genomes, 1176 marker genes, 631 marker sets)
-Haemophilus parasuis	Haemophilus parasuis (2 genomes, 1385 marker genes, 136 marker sets)
-Halalkalicoccus jeotgali	Halalkalicoccus jeotgali (2 genomes, 1003 marker genes, 212 marker sets)
-Haloarcula californiae	Haloarcula californiae (2 genomes, 1047 marker genes, 260 marker sets)
-Haloarcula vallismortis	Haloarcula vallismortis (2 genomes, 1075 marker genes, 244 marker sets)
-Halobiforma lacisalsi	Halobiforma lacisalsi (2 genomes, 1026 marker genes, 320 marker sets)
-Haloferax denitrificans	Haloferax denitrificans (2 genomes, 1052 marker genes, 231 marker sets)
-Haloferax mucosum	Haloferax mucosum (2 genomes, 1030 marker genes, 193 marker sets)
-Haloferax sulfurifontis	Haloferax sulfurifontis (2 genomes, 1054 marker genes, 237 marker sets)
-Haloferax volcanii	Haloferax volcanii (3 genomes, 864 marker genes, 230 marker sets)
-Haloquadratum walsbyi	Haloquadratum walsbyi (3 genomes, 798 marker genes, 192 marker sets)
-Helicobacter cetorum	Helicobacter cetorum (2 genomes, 927 marker genes, 162 marker sets)
-Helicobacter pylori	Helicobacter pylori (20 genomes, 773 marker genes, 143 marker sets)
-Histophilus somni	Histophilus somni (2 genomes, 1341 marker genes, 98 marker sets)
-Hydrogenobacter thermophilus	Hydrogenobacter thermophilus (2 genomes, 1116 marker genes, 52 marker sets)
-Hyphomicrobium denitrificans	Hyphomicrobium denitrificans (2 genomes, 1390 marker genes, 196 marker sets)
-Isoptericola variabilis	Isoptericola variabilis (2 genomes, 1351 marker genes, 168 marker sets)
-Jonquetella anthropi	Jonquetella anthropi (2 genomes, 987 marker genes, 78 marker sets)
-Kandleria vitulina	Kandleria vitulina (3 genomes, 1026 marker genes, 154 marker sets)
-Klebsiella oxytoca	Klebsiella oxytoca (5 genomes, 1725 marker genes, 377 marker sets)
-Klebsiella pneumoniae	Klebsiella pneumoniae (20 genomes, 1598 marker genes, 383 marker sets)
-Lachnobacterium bovis	Lachnobacterium bovis (2 genomes, 1164 marker genes, 173 marker sets)
-Lachnospira multipara	Lachnospira multipara (3 genomes, 1045 marker genes, 196 marker sets)
-Lactobacillus acidophilus	Lactobacillus acidophilus (3 genomes, 800 marker genes, 127 marker sets)
-Lactobacillus amylovorus	Lactobacillus amylovorus (2 genomes, 865 marker genes, 112 marker sets)
-Lactobacillus brevis	Lactobacillus brevis (4 genomes, 752 marker genes, 203 marker sets)
-Lactobacillus buchneri	Lactobacillus buchneri (5 genomes, 853 marker genes, 186 marker sets)
-Lactobacillus casei	Lactobacillus casei (16 genomes, 772 marker genes, 222 marker sets)
-Lactobacillus crispatus	Lactobacillus crispatus (8 genomes, 762 marker genes, 178 marker sets)
-Lactobacillus delbrueckii	Lactobacillus delbrueckii (7 genomes, 742 marker genes, 159 marker sets)
-Lactobacillus fermentum	Lactobacillus fermentum (3 genomes, 949 marker genes, 129 marker sets)
-Lactobacillus gasseri	Lactobacillus gasseri (5 genomes, 692 marker genes, 131 marker sets)
-Lactobacillus helveticus	Lactobacillus helveticus (4 genomes, 731 marker genes, 148 marker sets)
-Lactobacillus iners	Lactobacillus iners (15 genomes, 639 marker genes, 125 marker sets)
-Lactobacillus jensenii	Lactobacillus jensenii (5 genomes, 813 marker genes, 106 marker sets)
-Lactobacillus johnsonii	Lactobacillus johnsonii (4 genomes, 777 marker genes, 130 marker sets)
-Lactobacillus paracasei	Lactobacillus paracasei (3 genomes, 1022 marker genes, 225 marker sets)
-Lactobacillus reuteri	Lactobacillus reuteri (9 genomes, 829 marker genes, 185 marker sets)
-Lactobacillus rhamnosus	Lactobacillus rhamnosus (10 genomes, 952 marker genes, 246 marker sets)
-Lactobacillus ruminis	Lactobacillus ruminis (2 genomes, 989 marker genes, 143 marker sets)
-Lactobacillus salivarius	Lactobacillus salivarius (5 genomes, 864 marker genes, 162 marker sets)
-Lactococcus garvieae	Lactococcus garvieae (4 genomes, 927 marker genes, 157 marker sets)
-Lactococcus lactis	Lactococcus lactis (10 genomes, 856 marker genes, 190 marker sets)
-Laribacter hongkongensis	Laribacter hongkongensis (2 genomes, 1579 marker genes, 150 marker sets)
-Legionella longbeachae	Legionella longbeachae (2 genomes, 1434 marker genes, 256 marker sets)
-Legionella pneumophila	Legionella pneumophila (8 genomes, 1140 marker genes, 213 marker sets)
-Legionella sainthelensi	Legionella sainthelensi (2 genomes, 1272 marker genes, 299 marker sets)
-Leptospira meyeri	Leptospira meyeri (2 genomes, 1272 marker genes, 278 marker sets)
-Leptotrichia goodfellowii	Leptotrichia goodfellowii (2 genomes, 1086 marker genes, 182 marker sets)
-Leuconostoc citreum	Leuconostoc citreum (4 genomes, 908 marker genes, 102 marker sets)
-Leuconostoc gelidum	Leuconostoc gelidum (2 genomes, 985 marker genes, 105 marker sets)
-Leuconostoc kimchii	Leuconostoc kimchii (2 genomes, 990 marker genes, 97 marker sets)
-Leuconostoc mesenteroides	Leuconostoc mesenteroides (3 genomes, 870 marker genes, 110 marker sets)
-Listeria monocytogenes	Listeria monocytogenes (20 genomes, 1262 marker genes, 179 marker sets)
-Loktanella vestfoldensis	Loktanella vestfoldensis (2 genomes, 1360 marker genes, 189 marker sets)
-Lysinibacillus fusiformis	Lysinibacillus fusiformis (2 genomes, 1610 marker genes, 299 marker sets)
-Mannheimia haemolytica	Mannheimia haemolytica (3 genomes, 1446 marker genes, 156 marker sets)
-Mariprofundus ferrooxydans	Mariprofundus ferrooxydans (2 genomes, 1329 marker genes, 184 marker sets)
-Megasphaera elsdenii	Megasphaera elsdenii (2 genomes, 1168 marker genes, 145 marker sets)
-Megasphaera genomosp.	Megasphaera genomosp. (2 genomes, 973 marker genes, 196 marker sets)
-Mesorhizobium ciceri	Mesorhizobium ciceri (3 genomes, 1605 marker genes, 386 marker sets)
-Mesorhizobium loti	Mesorhizobium loti (6 genomes, 1317 marker genes, 375 marker sets)
-Methanobrevibacter smithii	Methanobrevibacter smithii (3 genomes, 932 marker genes, 82 marker sets)
-Methanococcus maripaludis	Methanococcus maripaludis (4 genomes, 961 marker genes, 83 marker sets)
-Methylobacterium extorquens	Methylobacterium extorquens (4 genomes, 1402 marker genes, 302 marker sets)
-Methylococcus capsulatus	Methylococcus capsulatus (2 genomes, 1613 marker genes, 188 marker sets)
-Methylotenera mobilis	Methylotenera mobilis (2 genomes, 1353 marker genes, 143 marker sets)
-Methylotenera versatilis	Methylotenera versatilis (2 genomes, 1251 marker genes, 231 marker sets)
-Methyloversatilis universalis	Methyloversatilis universalis (3 genomes, 1615 marker genes, 262 marker sets)
-Mobiluncus curtisii	Mobiluncus curtisii (4 genomes, 1009 marker genes, 115 marker sets)
-Mobiluncus mulieris	Mobiluncus mulieris (4 genomes, 980 marker genes, 165 marker sets)
-Moraxella catarrhalis	Moraxella catarrhalis (8 genomes, 1131 marker genes, 113 marker sets)
-Mycobacterium abscessus	Mycobacterium abscessus (20 genomes, 1230 marker genes, 333 marker sets)
-Mycobacterium avium	Mycobacterium avium (3 genomes, 1306 marker genes, 324 marker sets)
-Mycobacterium bovis	Mycobacterium bovis (4 genomes, 1386 marker genes, 231 marker sets)
-Mycobacterium canettii	Mycobacterium canettii (4 genomes, 1378 marker genes, 260 marker sets)
-Mycobacterium gilvum	Mycobacterium gilvum (2 genomes, 1474 marker genes, 320 marker sets)
-Mycobacterium intracellulare	Mycobacterium intracellulare (3 genomes, 1375 marker genes, 278 marker sets)
-Mycobacterium leprae	Mycobacterium leprae (2 genomes, 1053 marker genes, 195 marker sets)
-Mycobacterium marinum	Mycobacterium marinum (2 genomes, 1415 marker genes, 358 marker sets)
-Mycobacterium massiliense	Mycobacterium massiliense (11 genomes, 1291 marker genes, 291 marker sets)
-Mycobacterium rhodesiae	Mycobacterium rhodesiae (2 genomes, 1202 marker genes, 411 marker sets)
-Mycobacterium smegmatis	Mycobacterium smegmatis (2 genomes, 1151 marker genes, 407 marker sets)
-Mycobacterium tuberculosis	Mycobacterium tuberculosis (20 genomes, 1077 marker genes, 383 marker sets)
-Mycoplasma agalactiae	Mycoplasma agalactiae (2 genomes, 457 marker genes, 44 marker sets)
-Mycoplasma arginini	Mycoplasma arginini (2 genomes, 361 marker genes, 170 marker sets)
-Mycoplasma bovis	Mycoplasma bovis (3 genomes, 447 marker genes, 52 marker sets)
-Mycoplasma canis	Mycoplasma canis (5 genomes, 460 marker genes, 37 marker sets)
-Mycoplasma fermentans	Mycoplasma fermentans (2 genomes, 506 marker genes, 49 marker sets)
-Mycoplasma gallisepticum	Mycoplasma gallisepticum (12 genomes, 451 marker genes, 45 marker sets)
-Mycoplasma genitalium	Mycoplasma genitalium (2 genomes, 435 marker genes, 21 marker sets)
-Mycoplasma hominis	Mycoplasma hominis (2 genomes, 411 marker genes, 42 marker sets)
-Mycoplasma hyopneumoniae	Mycoplasma hyopneumoniae (3 genomes, 417 marker genes, 47 marker sets)
-Mycoplasma hyorhinis	Mycoplasma hyorhinis (5 genomes, 427 marker genes, 49 marker sets)
-Mycoplasma leachii	Mycoplasma leachii (2 genomes, 551 marker genes, 49 marker sets)
-Mycoplasma mycoides	Mycoplasma mycoides (4 genomes, 476 marker genes, 64 marker sets)
-Mycoplasma pneumoniae	Mycoplasma pneumoniae (3 genomes, 448 marker genes, 33 marker sets)
-Mycoplasma synoviae	Mycoplasma synoviae (2 genomes, 457 marker genes, 39 marker sets)
-Myroides odoratimimus	Myroides odoratimimus (6 genomes, 1001 marker genes, 318 marker sets)
-Natronobacterium gregoryi	Natronobacterium gregoryi (2 genomes, 1012 marker genes, 271 marker sets)
-Natronorubrum tibetense	Natronorubrum tibetense (2 genomes, 1039 marker genes, 332 marker sets)
-Neisseria flavescens	Neisseria flavescens (2 genomes, 1305 marker genes, 164 marker sets)
-Neisseria gonorrhoeae	Neisseria gonorrhoeae (14 genomes, 1201 marker genes, 205 marker sets)
-Neisseria meningitidis	Neisseria meningitidis (20 genomes, 997 marker genes, 216 marker sets)
-Novosphingobium nitrogenifigens	Novosphingobium nitrogenifigens (2 genomes, 1642 marker genes, 232 marker sets)
-Oceanicaulis alexandrii	Oceanicaulis alexandrii (2 genomes, 1398 marker genes, 175 marker sets)
-Ochrobactrum intermedium	Ochrobactrum intermedium (2 genomes, 1521 marker genes, 251 marker sets)
-Oenococcus oeni	Oenococcus oeni (12 genomes, 770 marker genes, 112 marker sets)
-Oligotropha carboxidovorans	Oligotropha carboxidovorans (2 genomes, 1592 marker genes, 192 marker sets)
-Orientia tsutsugamushi	Orientia tsutsugamushi (2 genomes, 651 marker genes, 94 marker sets)
-Ornithobacterium rhinotracheale	Ornithobacterium rhinotracheale (2 genomes, 1172 marker genes, 138 marker sets)
-Oxalobacter formigenes	Oxalobacter formigenes (2 genomes, 1179 marker genes, 133 marker sets)
-Paenibacillus alvei	Paenibacillus alvei (3 genomes, 1429 marker genes, 356 marker sets)
-Paenibacillus mucilaginosus	Paenibacillus mucilaginosus (2 genomes, 1584 marker genes, 433 marker sets)
-Pantoea ananatis	Pantoea ananatis (4 genomes, 1893 marker genes, 263 marker sets)
-Parabacteroides merdae	Parabacteroides merdae (3 genomes, 1201 marker genes, 260 marker sets)
-Parachlamydia acanthamoebae	Parachlamydia acanthamoebae (2 genomes, 1064 marker genes, 203 marker sets)
-Parascardovia denticolens	Parascardovia denticolens (2 genomes, 908 marker genes, 87 marker sets)
-Pasteurella multocida	Pasteurella multocida (5 genomes, 1400 marker genes, 149 marker sets)
-Pectobacterium carotovorum	Pectobacterium carotovorum (2 genomes, 1949 marker genes, 285 marker sets)
-Pediococcus acidilactici	Pediococcus acidilactici (4 genomes, 836 marker genes, 109 marker sets)
-Pediococcus pentosaceus	Pediococcus pentosaceus (2 genomes, 936 marker genes, 98 marker sets)
-Pelosinus fermentans	Pelosinus fermentans (2 genomes, 1545 marker genes, 299 marker sets)
-Peptoniphilus lacrimalis	Peptoniphilus lacrimalis (2 genomes, 937 marker genes, 98 marker sets)
-Peptostreptococcus anaerobius	Peptostreptococcus anaerobius (2 genomes, 1024 marker genes, 136 marker sets)
-Persephonella lauensis	Persephonella lauensis (2 genomes, 1194 marker genes, 108 marker sets)
-Phaeobacter gallaeciensis	Phaeobacter gallaeciensis (4 genomes, 1371 marker genes, 329 marker sets)
-Photobacterium profundum	Photobacterium profundum (2 genomes, 1714 marker genes, 406 marker sets)
-Polynucleobacter necessarius	Polynucleobacter necessarius (3 genomes, 968 marker genes, 106 marker sets)
-Porphyromonas asaccharolytica	Porphyromonas asaccharolytica (2 genomes, 1014 marker genes, 131 marker sets)
-Porphyromonas gingivalis	Porphyromonas gingivalis (8 genomes, 974 marker genes, 194 marker sets)
-Prevotella amnii	Prevotella amnii (2 genomes, 985 marker genes, 155 marker sets)
-Prevotella bivia	Prevotella bivia (2 genomes, 1077 marker genes, 150 marker sets)
-Prevotella brevis	Prevotella brevis (2 genomes, 1125 marker genes, 185 marker sets)
-Prevotella buccae	Prevotella buccae (2 genomes, 1106 marker genes, 220 marker sets)
-Prevotella dentalis	Prevotella dentalis (2 genomes, 1171 marker genes, 188 marker sets)
-Prevotella denticola	Prevotella denticola (3 genomes, 1015 marker genes, 186 marker sets)
-Prevotella intermedia	Prevotella intermedia (2 genomes, 1108 marker genes, 149 marker sets)
-Prevotella maculosa	Prevotella maculosa (2 genomes, 1057 marker genes, 211 marker sets)
-Prevotella melaninogenica	Prevotella melaninogenica (2 genomes, 1039 marker genes, 225 marker sets)
-Prevotella micans	Prevotella micans (2 genomes, 1048 marker genes, 165 marker sets)
-Prevotella oralis	Prevotella oralis (2 genomes, 1159 marker genes, 165 marker sets)
-Prevotella oris	Prevotella oris (3 genomes, 1006 marker genes, 202 marker sets)
-Prevotella ruminicola	Prevotella ruminicola (2 genomes, 1088 marker genes, 224 marker sets)
-Prevotella timonensis	Prevotella timonensis (2 genomes, 983 marker genes, 206 marker sets)
-Prevotella veroralis	Prevotella veroralis (2 genomes, 986 marker genes, 200 marker sets)
-Prochlorococcus marinus	Prochlorococcus marinus (13 genomes, 862 marker genes, 183 marker sets)
-Propionibacterium acidifaciens	Propionibacterium acidifaciens (2 genomes, 539 marker genes, 376 marker sets)
-Propionibacterium acidipropionici	Propionibacterium acidipropionici (2 genomes, 1277 marker genes, 233 marker sets)
-Propionibacterium acnes	Propionibacterium acnes (20 genomes, 1053 marker genes, 218 marker sets)
-Propionibacterium avidum	Propionibacterium avidum (2 genomes, 1195 marker genes, 150 marker sets)
-Propionimicrobium lymphophilum	Propionimicrobium lymphophilum (2 genomes, 1112 marker genes, 105 marker sets)
-Proteus mirabilis	Proteus mirabilis (2 genomes, 1888 marker genes, 231 marker sets)
-Providencia alcalifaciens	Providencia alcalifaciens (2 genomes, 1875 marker genes, 218 marker sets)
-Providencia stuartii	Providencia stuartii (2 genomes, 1918 marker genes, 220 marker sets)
-Pseudoalteromonas haloplanktis	Pseudoalteromonas haloplanktis (2 genomes, 1596 marker genes, 348 marker sets)
-Pseudoalteromonas luteoviolacea	Pseudoalteromonas luteoviolacea (2 genomes, 1493 marker genes, 389 marker sets)
-Pseudoalteromonas piscicida	Pseudoalteromonas piscicida (2 genomes, 1903 marker genes, 366 marker sets)
-Pseudobutyrivibrio ruminis	Pseudobutyrivibrio ruminis (3 genomes, 937 marker genes, 238 marker sets)
-Pseudomonas aeruginosa	Pseudomonas aeruginosa (19 genomes, 1617 marker genes, 469 marker sets)
-Pseudomonas brassicacearum	Pseudomonas brassicacearum (2 genomes, 1982 marker genes, 393 marker sets)
-Pseudomonas chlororaphis	Pseudomonas chlororaphis (2 genomes, 1904 marker genes, 402 marker sets)
-Pseudomonas fluorescens	Pseudomonas fluorescens (9 genomes, 1154 marker genes, 347 marker sets)
-Pseudomonas fulva	Pseudomonas fulva (2 genomes, 1488 marker genes, 484 marker sets)
-Pseudomonas mendocina	Pseudomonas mendocina (3 genomes, 1635 marker genes, 338 marker sets)
-Pseudomonas monteilii	Pseudomonas monteilii (3 genomes, 1761 marker genes, 372 marker sets)
-Pseudomonas putida	Pseudomonas putida (13 genomes, 1246 marker genes, 410 marker sets)
-Pseudomonas stutzeri	Pseudomonas stutzeri (13 genomes, 1189 marker genes, 403 marker sets)
-Pseudomonas syringae	Pseudomonas syringae (20 genomes, 1439 marker genes, 395 marker sets)
-Pseudomonas thermotolerans	Pseudomonas thermotolerans (2 genomes, 1731 marker genes, 219 marker sets)
-Pseudomonas umsongensis	Pseudomonas umsongensis (2 genomes, 1945 marker genes, 378 marker sets)
-Pseudomonas viridiflava	Pseudomonas viridiflava (3 genomes, 1876 marker genes, 420 marker sets)
-Pseudoxanthomonas suwonensis	Pseudoxanthomonas suwonensis (3 genomes, 1424 marker genes, 280 marker sets)
-Pyrococcus furiosus	Pyrococcus furiosus (2 genomes, 981 marker genes, 99 marker sets)
-Ralstonia pickettii	Ralstonia pickettii (2 genomes, 1715 marker genes, 287 marker sets)
-Ralstonia solanacearum	Ralstonia solanacearum (4 genomes, 1543 marker genes, 320 marker sets)
-Rhizobium etli	Rhizobium etli (2 genomes, 1571 marker genes, 331 marker sets)
-Rhizobium leguminosarum	Rhizobium leguminosarum (20 genomes, 1104 marker genes, 354 marker sets)
-Rhodobacter sphaeroides	Rhodobacter sphaeroides (5 genomes, 1409 marker genes, 281 marker sets)
-Rhodococcus equi	Rhodococcus equi (2 genomes, 1456 marker genes, 325 marker sets)
-Rhodococcus erythropolis	Rhodococcus erythropolis (2 genomes, 1456 marker genes, 402 marker sets)
-Rhodococcus pyridinivorans	Rhodococcus pyridinivorans (2 genomes, 1329 marker genes, 319 marker sets)
-Rhodonellum psychrophilum	Rhodonellum psychrophilum (2 genomes, 1473 marker genes, 372 marker sets)
-Rhodopseudomonas palustris	Rhodopseudomonas palustris (7 genomes, 1180 marker genes, 388 marker sets)
-Rhodospirillum rubrum	Rhodospirillum rubrum (2 genomes, 1731 marker genes, 250 marker sets)
-Rhodothermus marinus	Rhodothermus marinus (3 genomes, 1379 marker genes, 216 marker sets)
-Rickettsia canadensis	Rickettsia canadensis (2 genomes, 783 marker genes, 35 marker sets)
-Rickettsia massiliae	Rickettsia massiliae (2 genomes, 794 marker genes, 67 marker sets)
-Rickettsia prowazekii	Rickettsia prowazekii (5 genomes, 753 marker genes, 44 marker sets)
-Rickettsia rickettsii	Rickettsia rickettsii (14 genomes, 737 marker genes, 72 marker sets)
-Rickettsia slovaca	Rickettsia slovaca (2 genomes, 807 marker genes, 50 marker sets)
-Rickettsia typhi	Rickettsia typhi (3 genomes, 786 marker genes, 24 marker sets)
-Riemerella anatipestifer	Riemerella anatipestifer (5 genomes, 999 marker genes, 139 marker sets)
-Rothia dentocariosa	Rothia dentocariosa (2 genomes, 1057 marker genes, 145 marker sets)
-Rothia mucilaginosa	Rothia mucilaginosa (3 genomes, 990 marker genes, 143 marker sets)
-Rubrivivax benzoatilyticus	Rubrivivax benzoatilyticus (2 genomes, 1846 marker genes, 310 marker sets)
-Ruminococcus albus	Ruminococcus albus (2 genomes, 1187 marker genes, 284 marker sets)
-Ruminococcus flavefaciens	Ruminococcus flavefaciens (5 genomes, 783 marker genes, 287 marker sets)
-Ruminococcus gnavus	Ruminococcus gnavus (2 genomes, 1114 marker genes, 199 marker sets)
-Saccharomonospora azurea	Saccharomonospora azurea (2 genomes, 1323 marker genes, 314 marker sets)
-Salinispora arenicola	Salinispora arenicola (20 genomes, 1171 marker genes, 326 marker sets)
-Salinispora pacifica	Salinispora pacifica (20 genomes, 1005 marker genes, 278 marker sets)
-Salinispora tropica	Salinispora tropica (5 genomes, 1307 marker genes, 311 marker sets)
-Salmonella enterica	Salmonella enterica (20 genomes, 1643 marker genes, 283 marker sets)
-Saprospira grandis	Saprospira grandis (2 genomes, 1147 marker genes, 326 marker sets)
-Selenomonas artemidis	Selenomonas artemidis (2 genomes, 1227 marker genes, 134 marker sets)
-Selenomonas bovis	Selenomonas bovis (2 genomes, 1210 marker genes, 191 marker sets)
-Selenomonas ruminantium	Selenomonas ruminantium (4 genomes, 1010 marker genes, 375 marker sets)
-Selenomonas sputigena	Selenomonas sputigena (2 genomes, 1404 marker genes, 138 marker sets)
-Serratia marcescens	Serratia marcescens (2 genomes, 1727 marker genes, 324 marker sets)
-Serratia plymuthica	Serratia plymuthica (5 genomes, 1990 marker genes, 304 marker sets)
-Serratia proteamaculans	Serratia proteamaculans (2 genomes, 2115 marker genes, 304 marker sets)
-Shewanella baltica	Shewanella baltica (8 genomes, 1677 marker genes, 338 marker sets)
-Shigella boydii	Shigella boydii (6 genomes, 1605 marker genes, 348 marker sets)
-Shigella dysenteriae	Shigella dysenteriae (4 genomes, 1643 marker genes, 335 marker sets)
-Shigella flexneri	Shigella flexneri (18 genomes, 1512 marker genes, 333 marker sets)
-Shigella sonnei	Shigella sonnei (5 genomes, 1936 marker genes, 302 marker sets)
-Solobacterium moorei	Solobacterium moorei (2 genomes, 877 marker genes, 170 marker sets)
-Sphingomonas melonis	Sphingomonas melonis (3 genomes, 1562 marker genes, 203 marker sets)
-Sphingomonas phyllosphaerae	Sphingomonas phyllosphaerae (2 genomes, 1437 marker genes, 248 marker sets)
-Spirochaeta thermophila	Spirochaeta thermophila (2 genomes, 1122 marker genes, 152 marker sets)
-Staphylococcus aureus	Staphylococcus aureus (20 genomes, 1169 marker genes, 170 marker sets)
-Staphylococcus epidermidis	Staphylococcus epidermidis (20 genomes, 933 marker genes, 208 marker sets)
-Staphylococcus hominis	Staphylococcus hominis (2 genomes, 1209 marker genes, 107 marker sets)
-Staphylococcus lugdunensis	Staphylococcus lugdunensis (3 genomes, 1270 marker genes, 131 marker sets)
-Staphylococcus pseudintermedius	Staphylococcus pseudintermedius (2 genomes, 1324 marker genes, 134 marker sets)
-Stenotrophomonas maltophilia	Stenotrophomonas maltophilia (8 genomes, 1441 marker genes, 396 marker sets)
-Streptococcus agalactiae	Streptococcus agalactiae (20 genomes, 807 marker genes, 204 marker sets)
-Streptococcus anginosus	Streptococcus anginosus (5 genomes, 990 marker genes, 160 marker sets)
-Streptococcus australis	Streptococcus australis (2 genomes, 1197 marker genes, 124 marker sets)
-Streptococcus bovis	Streptococcus bovis (5 genomes, 976 marker genes, 140 marker sets)
-Streptococcus dysgalactiae	Streptococcus dysgalactiae (5 genomes, 982 marker genes, 204 marker sets)
-Streptococcus equi	Streptococcus equi (4 genomes, 961 marker genes, 136 marker sets)
-Streptococcus gallolyticus	Streptococcus gallolyticus (3 genomes, 1151 marker genes, 131 marker sets)
-Streptococcus infantarius	Streptococcus infantarius (2 genomes, 1097 marker genes, 118 marker sets)
-Streptococcus infantis	Streptococcus infantis (4 genomes, 971 marker genes, 131 marker sets)
-Streptococcus intermedius	Streptococcus intermedius (3 genomes, 1049 marker genes, 115 marker sets)
-Streptococcus mitis	Streptococcus mitis (11 genomes, 743 marker genes, 256 marker sets)
-Streptococcus mutans	Streptococcus mutans (8 genomes, 1053 marker genes, 121 marker sets)
-Streptococcus oralis	Streptococcus oralis (9 genomes, 871 marker genes, 196 marker sets)
-Streptococcus parasanguinis	Streptococcus parasanguinis (6 genomes, 999 marker genes, 203 marker sets)
-Streptococcus parauberis	Streptococcus parauberis (3 genomes, 969 marker genes, 126 marker sets)
-Streptococcus pneumoniae	Streptococcus pneumoniae (20 genomes, 845 marker genes, 160 marker sets)
-Streptococcus pseudopneumoniae	Streptococcus pseudopneumoniae (3 genomes, 1102 marker genes, 236 marker sets)
-Streptococcus pseudoporcinus	Streptococcus pseudoporcinus (2 genomes, 1166 marker genes, 114 marker sets)
-Streptococcus pyogenes	Streptococcus pyogenes (20 genomes, 885 marker genes, 150 marker sets)
-Streptococcus salivarius	Streptococcus salivarius (4 genomes, 1021 marker genes, 130 marker sets)
-Streptococcus sanguinis	Streptococcus sanguinis (13 genomes, 877 marker genes, 335 marker sets)
-Streptococcus suis	Streptococcus suis (14 genomes, 852 marker genes, 161 marker sets)
-Streptococcus thermophilus	Streptococcus thermophilus (6 genomes, 971 marker genes, 96 marker sets)
-Streptococcus urinalis	Streptococcus urinalis (2 genomes, 1107 marker genes, 100 marker sets)
-Streptomyces cattleya	Streptomyces cattleya (3 genomes, 1460 marker genes, 495 marker sets)
-Sulfobacillus acidophilus	Sulfobacillus acidophilus (2 genomes, 1273 marker genes, 192 marker sets)
-Sulfolobus acidocaldarius	Sulfolobus acidocaldarius (3 genomes, 819 marker genes, 115 marker sets)
-Sulfolobus islandicus	Sulfolobus islandicus (9 genomes, 778 marker genes, 149 marker sets)
-Sulfolobus solfataricus	Sulfolobus solfataricus (2 genomes, 822 marker genes, 116 marker sets)
-Sutterella wadsworthensis	Sutterella wadsworthensis (3 genomes, 935 marker genes, 232 marker sets)
-Synechococcus elongatus	Synechococcus elongatus (2 genomes, 1468 marker genes, 121 marker sets)
-Taylorella asinigenitalis	Taylorella asinigenitalis (2 genomes, 1125 marker genes, 58 marker sets)
-Taylorella equigenitalis	Taylorella equigenitalis (2 genomes, 1154 marker genes, 53 marker sets)
-Teredinibacter turnerae	Teredinibacter turnerae (8 genomes, 1640 marker genes, 312 marker sets)
-Thauera linaloolentis	Thauera linaloolentis (2 genomes, 1773 marker genes, 294 marker sets)
-Thermacetogenium phaeum	Thermacetogenium phaeum (2 genomes, 1344 marker genes, 157 marker sets)
-Thermoanaerobacterium thermosaccharolyticum	Thermoanaerobacterium thermosaccharolyticum (2 genomes, 1317 marker genes, 136 marker sets)
-Thermobifida fusca	Thermobifida fusca (2 genomes, 1421 marker genes, 225 marker sets)
-Thermus oshimai	Thermus oshimai (2 genomes, 1196 marker genes, 112 marker sets)
-Thermus scotoductus	Thermus scotoductus (2 genomes, 1098 marker genes, 162 marker sets)
-Thermus thermophilus	Thermus thermophilus (4 genomes, 1100 marker genes, 123 marker sets)
-Thioalkalivibrio thiocyanoxidans	Thioalkalivibrio thiocyanoxidans (2 genomes, 1159 marker genes, 330 marker sets)
-Thiobacillus denitrificans	Thiobacillus denitrificans (2 genomes, 1290 marker genes, 203 marker sets)
-Treponema denticola	Treponema denticola (9 genomes, 954 marker genes, 221 marker sets)
-Treponema pallidum	Treponema pallidum (3 genomes, 717 marker genes, 44 marker sets)
-Treponema vincentii	Treponema vincentii (2 genomes, 946 marker genes, 178 marker sets)
-Ureaplasma parvum	Ureaplasma parvum (5 genomes, 420 marker genes, 35 marker sets)
-Ureaplasma urealyticum	Ureaplasma urealyticum (10 genomes, 386 marker genes, 50 marker sets)
-Variovorax paradoxus	Variovorax paradoxus (5 genomes, 1314 marker genes, 368 marker sets)
-Veillonella atypica	Veillonella atypica (3 genomes, 1145 marker genes, 136 marker sets)
-Veillonella parvula	Veillonella parvula (2 genomes, 1174 marker genes, 97 marker sets)
-Vibrio alginolyticus	Vibrio alginolyticus (5 genomes, 1283 marker genes, 392 marker sets)
-Vibrio cholerae	Vibrio cholerae (20 genomes, 1729 marker genes, 348 marker sets)
-Vibrio fischeri	Vibrio fischeri (2 genomes, 1814 marker genes, 227 marker sets)
-Vibrio harveyi	Vibrio harveyi (3 genomes, 1674 marker genes, 373 marker sets)
-Vibrio mimicus	Vibrio mimicus (2 genomes, 1752 marker genes, 276 marker sets)
-Vibrio parahaemolyticus	Vibrio parahaemolyticus (12 genomes, 1733 marker genes, 363 marker sets)
-Vibrio splendidus	Vibrio splendidus (2 genomes, 1757 marker genes, 310 marker sets)
-Vibrio vulnificus	Vibrio vulnificus (5 genomes, 1802 marker genes, 386 marker sets)
-Wigglesworthia glossinidia	Wigglesworthia glossinidia (2 genomes, 679 marker genes, 9 marker sets)
-Wohlfahrtiimonas chitiniclastica	Wohlfahrtiimonas chitiniclastica (2 genomes, 1335 marker genes, 78 marker sets)
-Wolbachia endosymbiont of Culex quinquefasciatus	Wolbachia endosymbiont of Culex quinquefasciatus (2 genomes, 747 marker genes, 56 marker sets)
-Xanthomonas axonopodis	Xanthomonas axonopodis (5 genomes, 1627 marker genes, 365 marker sets)
-Xanthomonas campestris	Xanthomonas campestris (5 genomes, 1623 marker genes, 336 marker sets)
-Xanthomonas oryzae	Xanthomonas oryzae (3 genomes, 1627 marker genes, 339 marker sets)
-Xylella fastidiosa	Xylella fastidiosa (10 genomes, 1207 marker genes, 178 marker sets)
-Yersinia enterocolitica	Yersinia enterocolitica (5 genomes, 1868 marker genes, 316 marker sets)
-Yersinia pestis	Yersinia pestis (20 genomes, 1683 marker genes, 330 marker sets)
-Yersinia pseudotuberculosis	Yersinia pseudotuberculosis (4 genomes, 1975 marker genes, 263 marker sets)
-Zymomonas mobilis	Zymomonas mobilis (3 genomes, 1142 marker genes, 133 marker sets)