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comparison chira_extract.xml @ 2:061844f6837f draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chira commit 26bdea4b0623c6d766c07711d6907b26da0672c0"
author iuc
date Fri, 06 Mar 2020 10:30:55 -0500
parents de66a3316735
children dea6bc47a47e
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1:de66a3316735 2:061844f6837f
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
7 <command detect_errors="aggressive"><![CDATA[ 7 <command detect_errors="aggressive"><![CDATA[
8 #set $genomic_fasta = '' 8 #set $genomic_fasta = ''
9 #if str($annotation.annot_choice) == "yes": 9 #if str($annotation.annot_choice) == "yes":
10 #if str($annotation.fasta_source.fasta_source_selector) == 'history': 10 #if str($annotation.fasta_source.fasta_source_selector) == 'history':
11 #set $genomic_fasta = '$annotation.fasta_source.fasta' 11 #set $genomic_fasta = $annotation.fasta_source.fasta
12 #else 12 #else
13 #set $genomic_fasta = '$annotation.fasta_source.fasta_id.fields.path' 13 #set $genomic_fasta = $annotation.fasta_source.fasta_id.fields.path
14 #end if 14 #end if
15 #end if 15 #end if
16 chira_extract.py 16 chira_extract.py
17 -l '$loci' 17 -l '$loci'
18 #if str($annotation.annot_choice) == "yes": 18 #if str($annotation.annot_choice) == "yes":
49 <param name="fasta_source_selector" type="select" label="Choose the source for the FASTA file"> 49 <param name="fasta_source_selector" type="select" label="Choose the source for the FASTA file">
50 <option value="history" selected="true">History</option> 50 <option value="history" selected="true">History</option>
51 <option value="preloaded">Server indexed files</option> 51 <option value="preloaded">Server indexed files</option>
52 </param> 52 </param>
53 <when value="history"> 53 <when value="history">
54 <param name="fasta" type="data" format="fasta" label="FASTA file" /> 54 <param name="fasta" type="data" format="fasta" label="Genomic FASTA file" />
55 </when> 55 </when>
56 <when value="preloaded"> 56 <when value="preloaded">
57 <param name="fasta_id" type="select"> 57 <param name="fasta_id" type="select" label="Select FASTA index">
58 <options from_data_table="fasta_indexes" /> 58 <options from_data_table="fasta_indexes" />
59 </param> 59 </param>
60 </when> 60 </when>
61 </conditional> 61 </conditional>
62 </when> 62 </when>