Mercurial > repos > iuc > chira_extract

diff chira_extract.xml @ 2:061844f6837f draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chira commit 26bdea4b0623c6d766c07711d6907b26da0672c0"
author iuc
date Fri, 06 Mar 2020 10:30:55 -0500
parents de66a3316735
children dea6bc47a47e
line wrap: on
line diff
--- a/chira_extract.xml	Mon Mar 02 13:36:23 2020 -0500
+++ b/chira_extract.xml	Fri Mar 06 10:30:55 2020 -0500
@@ -8,9 +8,9 @@
         #set $genomic_fasta = ''
         #if str($annotation.annot_choice) == "yes":
             #if str($annotation.fasta_source.fasta_source_selector) == 'history':
-                #set $genomic_fasta = '$annotation.fasta_source.fasta'
+                #set $genomic_fasta = $annotation.fasta_source.fasta
             #else
-                #set $genomic_fasta = '$annotation.fasta_source.fasta_id.fields.path'
+                #set $genomic_fasta = $annotation.fasta_source.fasta_id.fields.path
             #end if
         #end if
         chira_extract.py
@@ -51,10 +51,10 @@
                         <option value="preloaded">Server indexed files</option>
                     </param>
                     <when value="history">
-                        <param name="fasta" type="data" format="fasta" label="FASTA file" />
+                        <param name="fasta" type="data" format="fasta" label="Genomic FASTA file" />
                     </when>
                     <when value="preloaded">
-                       <param name="fasta_id" type="select">
+                       <param name="fasta_id" type="select" label="Select FASTA index">
                           <options from_data_table="fasta_indexes" />
                        </param>
                     </when>