Mercurial > repos > iuc > cialign

comparison cialign.xml @ 1:3c5bdab3c7b7 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/cialign commit 4272ec0a9c9fc6c2a54aa702a3dc446ec598ffcc
author iuc
date Tue, 05 Aug 2025 20:08:31 +0000
parents c0a3b4607e66
children
comparison
equal deleted inserted replaced
0:c0a3b4607e66 1:3c5bdab3c7b7
478 <param name="get_section_param" type="select" label="Retrieve and process a section of the alignment?"> 478 <param name="get_section_param" type="select" label="Retrieve and process a section of the alignment?">
479 <option value="true" >Yes</option> 479 <option value="true" >Yes</option>
480 <option value="false" selected="true">No</option> 480 <option value="false" selected="true">No</option>
481 </param> 481 </param>
482 <when value="true"> 482 <when value="true">
483 <param argument="--section_start" type="integer" label="Section start" help="Start position in the original alignment for the section to be extracted"/> 483 <param argument="--section_start" value="" type="integer" label="Section start" help="Start position in the original alignment for the section to be extracted"/>
484 <param argument="--section_end" type="integer" label="Section end" help="End position in the original alignment for the section to be extracted"/> 484 <param argument="--section_end" value="" type="integer" label="Section end" help="End position in the original alignment for the section to be extracted"/>
485 </when> 485 </when>
486 <when value="false"/> 486 <when value="false"/>
487 </conditional> 487 </conditional>
488 <!-- replace bases--> 488 <!-- replace bases-->
489 <param argument="--replace_input_tu" type="boolean" checked="false" falsevalue="" truevalue="--replace_input_tu" label="Replace input T - U " help="Generates a copy of the input alignment with U's instead of T's"/> 489 <param argument="--replace_input_tu" type="boolean" checked="false" falsevalue="" truevalue="--replace_input_tu" label="Replace input T - U " help="Generates a copy of the input alignment with U's instead of T's"/>