annotate resample.xml @ 12:290a11559985 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit e3d1aad2204a3385aa66f3b0625747151e9f94e8"
author iuc
date Mon, 22 Nov 2021 12:23:12 +0000
parents 31a35811dda6
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1 <?xml version="1.0"?>
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2 <tool id="circos_resample" name="Circos: Resample 1/2D data" version="@WRAPPER_VERSION@">
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3 <description>reduce numbers of points in a dataset before plotting</description>
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4 <macros>
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5 <import>macros.xml</import>
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6 </macros>
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7 <edam_topics>
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8 <edam_topic>topic_0797</edam_topic>
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9 <edam_topic>topic_0092</edam_topic>
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10 </edam_topics>
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11 <edam_operations>
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12 <edam_operation>operation_3436</edam_operation>
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13 </edam_operations>
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14 <expand macro="requirements" />
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15 <command detect_errors="exit_code"><![CDATA[
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16 resample
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17 -bin '$bins'
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18 $method
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19 < '$input' | sed 's/ /\t/g' > '$output'
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20 ]]></command>
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21 <inputs>
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22 <param name="input" type="data" format="tabular" label="1D/2D Data track"/>
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23 <param name="bins" type="integer" value="1000000" min="1" label="Bin size" />
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24
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25 <param name="method" type="select" label="Summarization method">
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26 <option value="-avg">[2D] Average</option>
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27 <option value="-min">[2D] Minimum value in bin</option>
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28 <option value="-max">[2D] Maximum value in bin</option>
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29 <option value="-sum">[2D] Sum of values in bin</option>
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30 <option value="-count">[1D] Count bins</option>
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31 </param>
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32 </inputs>
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33 <outputs>
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34 <data name="output" format="tabular" />
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35 </outputs>
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36 <tests>
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37 <test>
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38 <param name="input" value="resample/1.tab" ftype="tabular" />
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39 <param name="bins" value="10000000" />
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40 <output name="output" file="resample/1.out" ftype="tabular" />
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41 </test>
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42 </tests>
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43 <help><![CDATA[
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44 From the script's documentation:
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45
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46 The data resolution in a figure is limited by the output print, or screen,
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47 resolution and our own visual acuity.
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48
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49 To read more about how these limits affect figure design, see
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50 `this page <http://mkweb.bcgsc.ca/images/resolution/visual-acuity-sequence-visualization.pdf>`__
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51
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52 This script is designed to convert very high-resolution data tracks to
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53 low-resolution equivalents which are easier to interpret and faster to
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54 draw.
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55
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56 ]]></help>
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57 <expand macro="citations" />
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58 </tool>