Mercurial > repos > iuc > circos
annotate karyotype-colors.py @ 13:c4bde687c846 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit 0cfd88d16b0b20a66d4b21b037ddee6a8c440d88
author | iuc |
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date | Wed, 12 Apr 2023 15:09:05 +0000 |
parents | 4b519282a05b |
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4b519282a05b
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit ef20b4968a6d00c49209de6b723f8b96d8bd128a"
iuc
parents:
diff
changeset
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1 #!/usr/bin/env python |
4b519282a05b
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit ef20b4968a6d00c49209de6b723f8b96d8bd128a"
iuc
parents:
diff
changeset
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2 import sys |
4b519282a05b
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit ef20b4968a6d00c49209de6b723f8b96d8bd128a"
iuc
parents:
diff
changeset
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3 |
4b519282a05b
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit ef20b4968a6d00c49209de6b723f8b96d8bd128a"
iuc
parents:
diff
changeset
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4 |
4b519282a05b
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit ef20b4968a6d00c49209de6b723f8b96d8bd128a"
iuc
parents:
diff
changeset
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5 highest = int(sys.argv[1]) |
4b519282a05b
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit ef20b4968a6d00c49209de6b723f8b96d8bd128a"
iuc
parents:
diff
changeset
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6 for idx in range(highest + 1): |
4b519282a05b
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit ef20b4968a6d00c49209de6b723f8b96d8bd128a"
iuc
parents:
diff
changeset
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7 sys.stdout.write( |
4b519282a05b
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit ef20b4968a6d00c49209de6b723f8b96d8bd128a"
iuc
parents:
diff
changeset
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8 "chr{idx}color = lch(66,104,{pos})\n".format( |
4b519282a05b
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit ef20b4968a6d00c49209de6b723f8b96d8bd128a"
iuc
parents:
diff
changeset
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9 idx=idx, pos=int(float(idx) / highest * 360) |
4b519282a05b
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit ef20b4968a6d00c49209de6b723f8b96d8bd128a"
iuc
parents:
diff
changeset
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10 ) |
4b519282a05b
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit ef20b4968a6d00c49209de6b723f8b96d8bd128a"
iuc
parents:
diff
changeset
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11 ) |