Mercurial > repos > iuc > circos
comparison alignments-to-links.xml @ 2:014a21767ac4 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit 076837a2e9c2b6ececcea4aa286ea7a412387a96"
| author | iuc |
|---|---|
| date | Tue, 17 Sep 2019 16:54:57 -0400 |
| parents | |
| children | df7356989ac1 |
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| 1:ae9994cf526f | 2:014a21767ac4 |
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| 1 <?xml version="1.0"?> | |
| 2 <tool id="circos_aln_to_links" name="Circos: Alignments to links" version="@WRAPPER_VERSION@"> | |
| 3 <description>reformats alignment files to prepare for Circos</description> | |
| 4 <macros> | |
| 5 <import>macros.xml</import> | |
| 6 </macros> | |
| 7 <expand macro="requirements"> | |
| 8 </expand> | |
| 9 <command detect_errors="exit_code"><![CDATA[ | |
| 10 python '$__tool_directory__/alignments-to-links.py' '$input' '$input.ext' > '$output' | |
| 11 ]]></command> | |
| 12 <inputs> | |
| 13 <param name="input" type="data" format="maf,xmfa,stockholm" label="Alignment file (maf, xmfa, stockholm)" /> | |
| 14 </inputs> | |
| 15 <outputs> | |
| 16 <data name="output" format="tabular" /> | |
| 17 </outputs> | |
| 18 <tests> | |
| 19 <test> | |
| 20 <param name="input" value="alignments/1.maf" ftype="maf" /> | |
| 21 <output name="output" file="alignments/1.tab" ftype="tabular" /> | |
| 22 </test> | |
| 23 </tests> | |
| 24 <help><![CDATA[ | |
| 25 Converts several standard alignment formats into a format appropriate for Circos plots. | |
| 26 ]]></help> | |
| 27 <expand macro="citations" /> | |
| 28 </tool> |