Mercurial > repos > iuc > circos
comparison tableviewer.xml @ 12:290a11559985 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit e3d1aad2204a3385aa66f3b0625747151e9f94e8"
author | iuc |
---|---|
date | Mon, 22 Nov 2021 12:23:12 +0000 |
parents | df7356989ac1 |
children | c4bde687c846 |
comparison
equal
deleted
inserted
replaced
11:31a35811dda6 | 12:290a11559985 |
---|---|
584 </link> | 584 </link> |
585 </links> | 585 </links> |
586 | 586 |
587 <<include etc/colors_fonts_patterns.conf>> | 587 <<include etc/colors_fonts_patterns.conf>> |
588 <<include etc/housekeeping.conf>> | 588 <<include etc/housekeeping.conf>> |
589 ]]></configfile> | 589 max_ticks* = ${limits.max_ticks} |
590 max_ideograms* = ${limits.max_ideograms} | |
591 max_links* = ${limits.max_links} | |
592 max_points_per_track* = ${limits.max_points_per_track} | |
593 ]]></configfile> | |
590 </configfiles> | 594 </configfiles> |
591 <inputs> | 595 <inputs> |
592 <param name="table" type="data" format="tabular" label="Input table"/> | 596 <param name="table" type="data" format="tabular" label="Input table"/> |
593 <section name="outputs" title="Outputs" expanded="true"> | 597 <section name="outputs" title="Outputs" expanded="true"> |
594 <param name="png" type="boolean" truevalue="yes" falsevalue="no" label="Output PNG" checked="true"/> | 598 <param name="png" type="boolean" truevalue="yes" falsevalue="no" label="Output PNG" checked="true"/> |
610 <param type="integer" value="24" label="Font Size" name="size" /> | 614 <param type="integer" value="24" label="Font Size" name="size" /> |
611 <expand macro="font_select" normal="true"/> | 615 <expand macro="font_select" normal="true"/> |
612 <expand macro="circos_color" label="Color" name="color" value="#000000" /> | 616 <expand macro="circos_color" label="Color" name="color" value="#000000" /> |
613 </section> | 617 </section> |
614 </section> | 618 </section> |
619 | |
620 <expand macro="limits" /> | |
615 </inputs> | 621 </inputs> |
616 <outputs> | 622 <outputs> |
617 <data name="output_png" format="png" from_work_dir="circos.png" label="Circos TableViewer Plot"> | 623 <data name="output_png" format="png" from_work_dir="circos.png" label="Circos TableViewer Plot"> |
618 <filter>outputs['png']</filter> | 624 <filter>outputs['png']</filter> |
619 </data> | 625 </data> |
627 <tests> | 633 <tests> |
628 <test> | 634 <test> |
629 <param name="table" value="tableviewer/1.tab" ftype="tabular" /> | 635 <param name="table" value="tableviewer/1.tab" ftype="tabular" /> |
630 <output name="output_png" file="tableviewer/1.png" ftype="png" compare="sim_size" delta="90000" /> | 636 <output name="output_png" file="tableviewer/1.png" ftype="png" compare="sim_size" delta="90000" /> |
631 </test> | 637 </test> |
638 <test expect_failure="true"> | |
639 <param name="table" value="tableviewer/1.tab" ftype="tabular" /> | |
640 <section name="limits"> | |
641 <param name="max_ticks" value="1" /> | |
642 <param name="max_ideograms" value="1" /> | |
643 <param name="max_links" value="1" /> | |
644 <param name="max_points_per_track" value="1" /> | |
645 </section> | |
646 </test> | |
632 </tests> | 647 </tests> |
633 <help><![CDATA[ | 648 <help><![CDATA[ |
634 The `official documentation <http://mkweb.bcgsc.ca/tableviewer/docs/>`__ has a lot of useful information. | 649 The `official documentation <http://mkweb.bcgsc.ca/tableviewer/docs/>`__ has a lot of useful information. |
635 | 650 |
636 You should provide a table that looks like: | 651 You should provide a table that looks like: |