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comparison alignments-to-links.xml @ 11:31a35811dda6 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit b9ec351920dbc83fa14bd1f8cfdd0a6a19b89473"
author iuc
date Tue, 16 Nov 2021 09:20:08 +0000
parents df7356989ac1
children
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10:7f13dc906cb9 11:31a35811dda6
2 <tool id="circos_aln_to_links" name="Circos: Alignments to links" version="@WRAPPER_VERSION@"> 2 <tool id="circos_aln_to_links" name="Circos: Alignments to links" version="@WRAPPER_VERSION@">
3 <description>reformats alignment files to prepare for Circos</description> 3 <description>reformats alignment files to prepare for Circos</description>
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements">
8 </expand>
9 <edam_topics> 7 <edam_topics>
10 <edam_topic>topic_0797</edam_topic> 8 <edam_topic>topic_0797</edam_topic>
11 <edam_topic>topic_0092</edam_topic> 9 <edam_topic>topic_0092</edam_topic>
12 </edam_topics> 10 </edam_topics>
13 <edam_operations> 11 <edam_operations>
14 <edam_operation>operation_1812</edam_operation> 12 <edam_operation>operation_1812</edam_operation>
15 </edam_operations> 13 </edam_operations>
14 <expand macro="requirements">
15 </expand>
16 <command detect_errors="exit_code"><![CDATA[ 16 <command detect_errors="exit_code"><![CDATA[
17 python '$__tool_directory__/alignments-to-links.py' '$input' '$input.ext' > '$output' 17 python '$__tool_directory__/alignments-to-links.py' '$input' '$input.ext' > '$output'
18 ]]></command> 18 ]]></command>
19 <inputs> 19 <inputs>
20 <param name="input" type="data" format="maf,xmfa,stockholm" label="Alignment file (maf, xmfa, stockholm)" /> 20 <param name="input" type="data" format="maf,xmfa,stockholm" label="Alignment file (maf, xmfa, stockholm)" />