Mercurial > repos > iuc > circos

comparison karyotype-from-lengths.py @ 7:4b519282a05b draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit ef20b4968a6d00c49209de6b723f8b96d8bd128a"
author iuc
date Mon, 25 May 2020 10:52:02 -0400
parents
children e6cbe3190642
comparison
equal deleted inserted replaced
6:740057a5126d 7:4b519282a05b
1 #!/usr/bin/env python
2 import csv
3 import sys
4
5
6 idx = 0
7 with open(sys.argv[1], "r") as csvfile:
8 spamreader = csv.reader(csvfile, delimiter="\t", quotechar='"')
9 for row in spamreader:
10 if len(row) < 2:
11 continue
12
13 seq_id = row[0]
14 length = row[1]
15
16 sys.stdout.write(
17 "chr - {seq_id} {seq_id} 0 {length} chr{idx}color\n".format(
18 seq_id=seq_id,
19 idx=idx,
20 length=length,
21 )
22 )
23 idx += 1