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diff scatter-from-wiggle.xml @ 2:014a21767ac4 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit 076837a2e9c2b6ececcea4aa286ea7a412387a96"
author iuc
date Tue, 17 Sep 2019 16:54:57 -0400
parents
children df7356989ac1
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/scatter-from-wiggle.xml	Tue Sep 17 16:54:57 2019 -0400
@@ -0,0 +1,30 @@
+<?xml version="1.0"?>
+<tool id="circos_wiggle_to_scatter" name="Circos: bigWig to Scatter" version="@WRAPPER_VERSION@">
+    <description>reformats bigWig files to prepare for Circos 2d scatter/line/histogram plots</description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="requirements">
+    </expand>
+    <command detect_errors="exit_code"><![CDATA[
+python '$__tool_directory__/scatter-from-wiggle.py' '$input' > '$output'
+    ]]></command>
+    <inputs>
+        <param name="input" type="data" format="bigwig" label="Data file" />
+    </inputs>
+    <outputs>
+        <data name="output" format="tabular" />
+    </outputs>
+    <tests>
+        <test>
+            <param name="input" value="scatter/1.bw" ftype="bigwig" />
+            <output name="output" file="scatter/1.out" ftype="tabular" />
+        </test>
+    </tests>
+    <help><![CDATA[
+Converts standard bigWig files into a format appropriate for Circos scatter/line/histogram plot tracks.
+
+If you need to process bedgraph, please convert those to bigwig first.
+    ]]></help>
+    <expand macro="citations" />
+</tool>