Mercurial > repos > iuc > circos
diff test-data/tiles/2.gff3 @ 2:014a21767ac4 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit 076837a2e9c2b6ececcea4aa286ea7a412387a96"
| author | iuc |
|---|---|
| date | Tue, 17 Sep 2019 16:54:57 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/tiles/2.gff3 Tue Sep 17 16:54:57 2019 -0400 @@ -0,0 +1,100 @@ +##gff-version 3 +#!gff-spec-version 1.21 +#!processor NCBI annotwriter +#!genome-build ASM584v2 +#!genome-build-accession NCBI_Assembly:GCF_000005845.2 +##sequence-region NC_000913.3 1 4641652 +##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=511145 +NC_000913.3 RefSeq region 1 4641652 . + . ID=NC_000913.3:1..4641652;Dbxref=taxon:511145;Is_circular=true;Name=ANONYMOUS;gbkey=Src;genome=chromosome;mol_type=genomic DNA;strain=K-12;substrain=MG1655 +NC_000913.3 RefSeq gene 190 255 . + . ID=gene-b0001;Dbxref=ASAP:ABE-0000006,ECOCYC:EG11277,EcoGene:EG11277,GeneID:944742;Name=thrL;gbkey=Gene;gene=thrL;gene_biotype=protein_coding;gene_synonym=ECK0001;locus_tag=b0001 +NC_000913.3 RefSeq CDS 190 255 . + 0 ID=cds-NP_414542.1;Parent=gene-b0001;Dbxref=UniProtKB/Swiss-Prot:P0AD86,Genbank:NP_414542.1,ASAP:ABE-0000006,ECOCYC:EG11277,EcoGene:EG11277,GeneID:944742;Name=NP_414542.1;gbkey=CDS;gene=thrL;locus_tag=b0001;orig_transcript_id=gnl|b0001|mrna.b0001;product=thr operon leader peptide;protein_id=NP_414542.1;transl_table=11 +NC_000913.3 RefSeq gene 337 2799 . + . ID=gene-b0002;Dbxref=ASAP:ABE-0000008,ECOCYC:EG10998,EcoGene:EG10998,GeneID:945803;Name=thrA;gbkey=Gene;gene=thrA;gene_biotype=protein_coding;gene_synonym=ECK0002,Hs,thrA1,thrA2,thrD;locus_tag=b0002 +NC_000913.3 RefSeq CDS 337 2799 . + 0 ID=cds-NP_414543.1;Parent=gene-b0002;Dbxref=UniProtKB/Swiss-Prot:P00561,Genbank:NP_414543.1,ASAP:ABE-0000008,ECOCYC:EG10998,EcoGene:EG10998,GeneID:945803;Name=NP_414543.1;gbkey=CDS;gene=thrA;locus_tag=b0002;orig_transcript_id=gnl|b0002|mrna.b0002;product=fused aspartate kinase/homoserine dehydrogenase 1;protein_id=NP_414543.1;transl_table=11 +NC_000913.3 RefSeq gene 2801 3733 . + . ID=gene-b0003;Dbxref=ASAP:ABE-0000010,ECOCYC:EG10999,EcoGene:EG10999,GeneID:947498;Name=thrB;gbkey=Gene;gene=thrB;gene_biotype=protein_coding;gene_synonym=ECK0003;locus_tag=b0003 +NC_000913.3 RefSeq CDS 2801 3733 . + 0 ID=cds-NP_414544.1;Parent=gene-b0003;Dbxref=UniProtKB/Swiss-Prot:P00547,Genbank:NP_414544.1,ASAP:ABE-0000010,ECOCYC:EG10999,EcoGene:EG10999,GeneID:947498;Name=NP_414544.1;gbkey=CDS;gene=thrB;locus_tag=b0003;orig_transcript_id=gnl|b0003|mrna.b0003;product=homoserine kinase;protein_id=NP_414544.1;transl_table=11 +NC_000913.3 RefSeq gene 3734 5020 . + . ID=gene-b0004;Dbxref=ASAP:ABE-0000012,ECOCYC:EG11000,EcoGene:EG11000,GeneID:945198;Name=thrC;gbkey=Gene;gene=thrC;gene_biotype=protein_coding;gene_synonym=ECK0004;locus_tag=b0004 +NC_000913.3 RefSeq CDS 3734 5020 . + 0 ID=cds-NP_414545.1;Parent=gene-b0004;Dbxref=UniProtKB/Swiss-Prot:P00934,Genbank:NP_414545.1,ASAP:ABE-0000012,ECOCYC:EG11000,EcoGene:EG11000,GeneID:945198;Name=NP_414545.1;gbkey=CDS;gene=thrC;locus_tag=b0004;orig_transcript_id=gnl|b0004|mrna.b0004;product=threonine synthase;protein_id=NP_414545.1;transl_table=11 +NC_000913.3 RefSeq gene 5234 5530 . + . ID=gene-b0005;Dbxref=ASAP:ABE-0000015,ECOCYC:G6081,EcoGene:EG14384,GeneID:944747;Name=yaaX;gbkey=Gene;gene=yaaX;gene_biotype=protein_coding;gene_synonym=ECK0005;locus_tag=b0005 +NC_000913.3 RefSeq CDS 5234 5530 . + 0 ID=cds-NP_414546.1;Parent=gene-b0005;Dbxref=UniProtKB/Swiss-Prot:P75616,Genbank:NP_414546.1,ASAP:ABE-0000015,ECOCYC:G6081,EcoGene:EG14384,GeneID:944747;Name=NP_414546.1;gbkey=CDS;gene=yaaX;locus_tag=b0005;orig_transcript_id=gnl|b0005|mrna.b0005;product=DUF2502 domain-containing protein YaaX;protein_id=NP_414546.1;transl_table=11 +NC_000913.3 RefSeq repeat_region 5566 5601 . + . ID=id-12;Note=REP1a;gbkey=repeat_region;rpt_type=other +NC_000913.3 RefSeq repeat_region 5637 5670 . - . ID=id-13;Note=REP1b;gbkey=repeat_region;rpt_type=other +NC_000913.3 RefSeq gene 5683 6459 . - . ID=gene-b0006;Dbxref=ASAP:ABE-0000018,ECOCYC:EG10011,EcoGene:EG10011,GeneID:944749;Name=yaaA;gbkey=Gene;gene=yaaA;gene_biotype=protein_coding;gene_synonym=ECK0006;locus_tag=b0006 +NC_000913.3 RefSeq CDS 5683 6459 . - 0 ID=cds-NP_414547.1;Parent=gene-b0006;Dbxref=UniProtKB/Swiss-Prot:P0A8I3,Genbank:NP_414547.1,ASAP:ABE-0000018,ECOCYC:EG10011,EcoGene:EG10011,GeneID:944749;Name=NP_414547.1;gbkey=CDS;gene=yaaA;locus_tag=b0006;orig_transcript_id=gnl|b0006|mrna.b0006;product=peroxide stress resistance protein YaaA;protein_id=NP_414547.1;transl_table=11 +NC_000913.3 RefSeq gene 6529 7959 . - . ID=gene-b0007;Dbxref=ASAP:ABE-0000020,ECOCYC:EG11555,EcoGene:EG11555,GeneID:944745;Name=yaaJ;gbkey=Gene;gene=yaaJ;gene_biotype=protein_coding;gene_synonym=ECK0007;locus_tag=b0007 +NC_000913.3 RefSeq CDS 6529 7959 . - 0 ID=cds-NP_414548.1;Parent=gene-b0007;Dbxref=UniProtKB/Swiss-Prot:P30143,Genbank:NP_414548.1,ASAP:ABE-0000020,ECOCYC:EG11555,EcoGene:EG11555,GeneID:944745;Name=NP_414548.1;gbkey=CDS;gene=yaaJ;locus_tag=b0007;orig_transcript_id=gnl|b0007|mrna.b0007;product=putative transporter YaaJ;protein_id=NP_414548.1;transl_table=11 +NC_000913.3 RefSeq gene 8238 9191 . + . ID=gene-b0008;Dbxref=ASAP:ABE-0000027,ECOCYC:EG11556,EcoGene:EG11556,GeneID:944748;Name=talB;gbkey=Gene;gene=talB;gene_biotype=protein_coding;gene_synonym=ECK0008,yaaK;locus_tag=b0008 +NC_000913.3 RefSeq CDS 8238 9191 . + 0 ID=cds-NP_414549.1;Parent=gene-b0008;Dbxref=UniProtKB/Swiss-Prot:P0A870,Genbank:NP_414549.1,ASAP:ABE-0000027,ECOCYC:EG11556,EcoGene:EG11556,GeneID:944748;Name=NP_414549.1;gbkey=CDS;gene=talB;locus_tag=b0008;orig_transcript_id=gnl|b0008|mrna.b0008;product=transaldolase B;protein_id=NP_414549.1;transl_table=11 +NC_000913.3 RefSeq gene 9306 9893 . + . ID=gene-b0009;Dbxref=ASAP:ABE-0000030,ECOCYC:EG11511,EcoGene:EG11511,GeneID:944760;Name=mog;gbkey=Gene;gene=mog;gene_biotype=protein_coding;gene_synonym=bisD,chlG,ECK0009,mogA,yaaG;locus_tag=b0009 +NC_000913.3 RefSeq CDS 9306 9893 . + 0 ID=cds-NP_414550.1;Parent=gene-b0009;Dbxref=UniProtKB/Swiss-Prot:P0AF03,Genbank:NP_414550.1,ASAP:ABE-0000030,ECOCYC:EG11511,EcoGene:EG11511,GeneID:944760;Name=NP_414550.1;gbkey=CDS;gene=mog;locus_tag=b0009;orig_transcript_id=gnl|b0009|mrna.b0009;product=molybdopterin adenylyltransferase;protein_id=NP_414550.1;transl_table=11 +NC_000913.3 RefSeq gene 9928 10494 . - . ID=gene-b0010;Dbxref=ASAP:ABE-0000032,ECOCYC:EG11512,EcoGene:EG11512,GeneID:944792;Name=satP;gbkey=Gene;gene=satP;gene_biotype=protein_coding;gene_synonym=ECK0010,yaaH;locus_tag=b0010 +NC_000913.3 RefSeq CDS 9928 10494 . - 0 ID=cds-NP_414551.1;Parent=gene-b0010;Dbxref=UniProtKB/Swiss-Prot:P0AC98,Genbank:NP_414551.1,ASAP:ABE-0000032,ECOCYC:EG11512,EcoGene:EG11512,GeneID:944792;Name=NP_414551.1;gbkey=CDS;gene=satP;locus_tag=b0010;orig_transcript_id=gnl|b0010|mrna.b0010;product=acetate/succinate:H(+) symporter;protein_id=NP_414551.1;transl_table=11 +NC_000913.3 RefSeq gene 10643 11356 . - . ID=gene-b0011;Dbxref=ASAP:ABE-0000037,ECOCYC:G6082,EcoGene:EG14340,GeneID:944771;Name=yaaW;gbkey=Gene;gene=yaaW;gene_biotype=protein_coding;gene_synonym=ECK0011;locus_tag=b0011 +NC_000913.3 RefSeq CDS 10643 11356 . - 0 ID=cds-NP_414552.1;Parent=gene-b0011;Dbxref=UniProtKB/Swiss-Prot:P75617,Genbank:NP_414552.1,ASAP:ABE-0000037,ECOCYC:G6082,EcoGene:EG14340,GeneID:944771;Name=NP_414552.1;gbkey=CDS;gene=yaaW;locus_tag=b0011;orig_transcript_id=gnl|b0011|mrna.b0011;product=putative enzyme-specific chaperone YaaW;protein_id=NP_414552.1;transl_table=11 +NC_000913.3 RefSeq gene 10830 11315 . + . ID=gene-b0012;Dbxref=ASAP:ABE-0000040,ECOCYC:EG11509,EcoGene:EG11509,GeneID:948295;Name=mbiA;gbkey=Gene;gene=mbiA;gene_biotype=protein_coding;gene_synonym=ECK0012,htgA,htpY;locus_tag=b0012 +NC_000913.3 RefSeq CDS 10830 11315 . + 0 ID=cds-YP_009518733.1;Parent=gene-b0012;Dbxref=UniProtKB/Swiss-Prot:P28697,Genbank:YP_009518733.1,ASAP:ABE-0000040,ECOCYC:EG11509,EcoGene:EG11509,GeneID:948295;Name=YP_009518733.1;gbkey=CDS;gene=mbiA;locus_tag=b0012;orig_transcript_id=gnl|b0012|mrna.CDS13;product=uncharacterized protein MbiA;protein_id=YP_009518733.1;transl_table=11 +NC_000913.3 RefSeq gene 11382 11786 . - . ID=gene-b0013;Dbxref=ASAP:ABE-0000043,ECOCYC:G8202,EcoGene:EG11513,GeneID:944751;Name=yaaI;gbkey=Gene;gene=yaaI;gene_biotype=protein_coding;gene_synonym=ECK0013;locus_tag=b0013 +NC_000913.3 RefSeq CDS 11382 11786 . - 0 ID=cds-NP_414554.1;Parent=gene-b0013;Dbxref=UniProtKB/Swiss-Prot:P28696,Genbank:NP_414554.1,ASAP:ABE-0000043,ECOCYC:G8202,EcoGene:EG11513,GeneID:944751;Name=NP_414554.1;gbkey=CDS;gene=yaaI;locus_tag=b0013;orig_transcript_id=gnl|b0013|mrna.b0013;product=DUF2541 domain-containing protein YaaI;protein_id=NP_414554.1;transl_table=11 +NC_000913.3 RefSeq gene 12163 14079 . + . ID=gene-b0014;Dbxref=ASAP:ABE-0000052,ECOCYC:EG10241,EcoGene:EG10241,GeneID:944750;Name=dnaK;gbkey=Gene;gene=dnaK;gene_biotype=protein_coding;gene_synonym=ECK0014,groPAB,groPC,groPF,grpC,grpF,seg;locus_tag=b0014 +NC_000913.3 RefSeq CDS 12163 14079 . + 0 ID=cds-NP_414555.1;Parent=gene-b0014;Dbxref=UniProtKB/Swiss-Prot:P0A6Y8,Genbank:NP_414555.1,ASAP:ABE-0000052,ECOCYC:EG10241,EcoGene:EG10241,GeneID:944750;Name=NP_414555.1;gbkey=CDS;gene=dnaK;locus_tag=b0014;orig_transcript_id=gnl|b0014|mrna.b0014;product=chaperone protein DnaK;protein_id=NP_414555.1;transl_table=11 +NC_000913.3 RefSeq gene 14168 15298 . + . ID=gene-b0015;Dbxref=ASAP:ABE-0000054,ECOCYC:EG10240,EcoGene:EG10240,GeneID:944753;Name=dnaJ;gbkey=Gene;gene=dnaJ;gene_biotype=protein_coding;gene_synonym=ECK0015,groP,grpC;locus_tag=b0015 +NC_000913.3 RefSeq CDS 14168 15298 . + 0 ID=cds-NP_414556.1;Parent=gene-b0015;Dbxref=UniProtKB/Swiss-Prot:P08622,Genbank:NP_414556.1,ASAP:ABE-0000054,ECOCYC:EG10240,EcoGene:EG10240,GeneID:944753;Name=NP_414556.1;gbkey=CDS;gene=dnaJ;locus_tag=b0015;orig_transcript_id=gnl|b0015|mrna.b0015;product=chaperone protein DnaJ;protein_id=NP_414556.1;transl_table=11 +NC_000913.3 RefSeq mobile_genetic_element 15387 16731 . + . ID=id-34;gbkey=mobile_element;mobile_element_type=insertion sequence:IS186A +NC_000913.3 RefSeq gene 15445 16557 . + . ID=gene-b0016;Dbxref=ASAP:ABE-0000058,ECOCYC:G6083,EcoGene:EG60001,GeneID:944754;Name=insL-1;gbkey=Gene;gene=insL-1;gene_biotype=protein_coding;gene_synonym=ECK0016,yi81-1;locus_tag=b0016 +NC_000913.3 RefSeq CDS 15445 16557 . + 0 ID=cds-NP_414557.1;Parent=gene-b0016;Dbxref=UniProtKB/Swiss-Prot:P0CF91,Genbank:NP_414557.1,ASAP:ABE-0000058,ECOCYC:G6083,EcoGene:EG60001,GeneID:944754;Name=NP_414557.1;gbkey=CDS;gene=insL-1;locus_tag=b0016;orig_transcript_id=gnl|b0016|mrna.b0016;product=IS186/IS421 transposase;protein_id=NP_414557.1;transl_table=11 +NC_000913.3 RefSeq gene 16751 16960 . - . ID=gene-b0018;Dbxref=ASAP:ABE-0000064,ECOCYC:EG10373,EcoGene:EG12074,GeneID:944756;Name=mokC;gbkey=Gene;gene=mokC;gene_biotype=protein_coding;gene_synonym=ECK0018,gefL;locus_tag=b0018 +NC_000913.3 RefSeq CDS 16751 16960 . - 0 ID=cds-NP_414559.1;Parent=gene-b0018;Dbxref=UniProtKB/Swiss-Prot:P33236,Genbank:NP_414559.1,ASAP:ABE-0000064,ECOCYC:EG10373,EcoGene:EG12074,GeneID:944756;Name=NP_414559.1;gbkey=CDS;gene=mokC;locus_tag=b0018;orig_transcript_id=gnl|b0018|mrna.b0018;product=regulatory protein MokC;protein_id=NP_414559.1;transl_table=11 +NC_000913.3 RefSeq gene 16751 16903 . - . ID=gene-b4412;Dbxref=ASAP:ABE-0047278,ECOCYC:G0-9563,EcoGene:EG10373,GeneID:2847744;Name=hokC;gbkey=Gene;gene=hokC;gene_biotype=protein_coding;gene_synonym=ECK0017,gef;locus_tag=b4412 +NC_000913.3 RefSeq CDS 16751 16903 . - 0 ID=cds-YP_025292.1;Parent=gene-b4412;Dbxref=UniProtKB/Swiss-Prot:P0ACG4,Genbank:YP_025292.1,ASAP:ABE-0047278,ECOCYC:G0-9563,EcoGene:EG10373,GeneID:2847744;Name=YP_025292.1;gbkey=CDS;gene=hokC;locus_tag=b4412;orig_transcript_id=gnl|b4412|mrna.b4412;product=protein HokC;protein_id=YP_025292.1;transl_table=11 +NC_000913.3 RefSeq gene 16952 17006 . + . ID=gene-b4413;Dbxref=ASAP:ABE-0047238,ECOCYC:G0-9581,EcoGene:EG31128,GeneID:2847745;Name=sokC;gbkey=Gene;gene=sokC;gene_biotype=ncRNA;gene_synonym=ECK0019,sof;locus_tag=b4413 +NC_000913.3 RefSeq ncRNA 16952 17006 . + . ID=rna-b4413;Parent=gene-b4413;Dbxref=ASAP:ABE-0047238,ECOCYC:G0-9581,EcoGene:EG31128,GeneID:2847745;gbkey=ncRNA;gene=sokC;locus_tag=b4413;product=antisense RNA blocking mokC and hokC translation +NC_000913.3 RefSeq exon 16952 17006 . + . ID=exon-b4413-1;Parent=rna-b4413;Dbxref=ASAP:ABE-0047238,ECOCYC:G0-9581,EcoGene:EG31128,GeneID:2847745;gbkey=ncRNA;gene=sokC;locus_tag=b4413;product=antisense RNA blocking mokC and hokC translation +NC_000913.3 RefSeq gene 17489 18655 . + . ID=gene-b0019;Dbxref=ASAP:ABE-0000068,ECOCYC:EG10652,EcoGene:EG10652,GeneID:944758;Name=nhaA;gbkey=Gene;gene=nhaA;gene_biotype=protein_coding;gene_synonym=ant,antA,ECK0020,hyc;locus_tag=b0019 +NC_000913.3 RefSeq CDS 17489 18655 . + 0 ID=cds-NP_414560.1;Parent=gene-b0019;Dbxref=UniProtKB/Swiss-Prot:P13738,Genbank:NP_414560.1,ASAP:ABE-0000068,ECOCYC:EG10652,EcoGene:EG10652,GeneID:944758;Name=NP_414560.1;gbkey=CDS;gene=nhaA;locus_tag=b0019;orig_transcript_id=gnl|b0019|mrna.b0019;product=Na(+):H(+) antiporter NhaA;protein_id=NP_414560.1;transl_table=11 +NC_000913.3 RefSeq gene 18715 19620 . + . ID=gene-b0020;Dbxref=ASAP:ABE-0000072,ECOCYC:EG11078,EcoGene:EG11078,GeneID:944757;Name=nhaR;gbkey=Gene;gene=nhaR;gene_biotype=protein_coding;gene_synonym=antO,ECK0021,yaaB;locus_tag=b0020 +NC_000913.3 RefSeq CDS 18715 19620 . + 0 ID=cds-NP_414561.1;Parent=gene-b0020;Dbxref=UniProtKB/Swiss-Prot:P0A9G2,Genbank:NP_414561.1,ASAP:ABE-0000072,ECOCYC:EG11078,EcoGene:EG11078,GeneID:944757;Name=NP_414561.1;gbkey=CDS;gene=nhaR;locus_tag=b0020;orig_transcript_id=gnl|b0020|mrna.b0020;product=DNA-binding transcriptional activator NhaR;protein_id=NP_414561.1;transl_table=11 +NC_000913.3 RefSeq mobile_genetic_element 19796 20563 . - . ID=id-47;gbkey=mobile_element;mobile_element_type=insertion sequence:IS1A +NC_000913.3 RefSeq gene 19811 20314 . - . ID=gene-b0021;Dbxref=ASAP:ABE-0000075,ECOCYC:G6085,EcoGene:EG60002,GeneID:944743;Name=insB-1;gbkey=Gene;gene=insB-1;gene_biotype=protein_coding;gene_synonym=ECK0022;locus_tag=b0021 +NC_000913.3 RefSeq CDS 19811 20314 . - 0 ID=cds-NP_414562.1;Parent=gene-b0021;Dbxref=UniProtKB/Swiss-Prot:P0CF25,Genbank:NP_414562.1,ASAP:ABE-0000075,ECOCYC:G6085,EcoGene:EG60002,GeneID:944743;Name=NP_414562.1;gbkey=CDS;gene=insB-1;locus_tag=b0021;orig_transcript_id=gnl|b0021|mrna.b0021;product=IS1 protein InsB;protein_id=NP_414562.1;transl_table=11 +NC_000913.3 RefSeq gene 20233 20508 . - . ID=gene-b0022;Dbxref=ASAP:ABE-0000078,ECOCYC:G6086,EcoGene:EG40001,GeneID:948449;Name=insA-1;gbkey=Gene;gene=insA-1;gene_biotype=protein_coding;gene_synonym=ECK0023;locus_tag=b0022 +NC_000913.3 RefSeq CDS 20233 20508 . - 0 ID=cds-NP_414563.1;Parent=gene-b0022;Dbxref=UniProtKB/Swiss-Prot:P0CF07,Genbank:NP_414563.1,ASAP:ABE-0000078,ECOCYC:G6086,EcoGene:EG40001,GeneID:948449;Name=NP_414563.1;gbkey=CDS;gene=insA-1;locus_tag=b0022;orig_transcript_id=gnl|b0022|mrna.b0022;product=IS1 protein InsA;protein_id=NP_414563.1;transl_table=11 +NC_000913.3 RefSeq gene 20815 21078 . - . ID=gene-b0023;Dbxref=ASAP:ABE-0000082,ECOCYC:EG10919,EcoGene:EG10919,GeneID:944759;Name=rpsT;gbkey=Gene;gene=rpsT;gene_biotype=protein_coding;gene_synonym=ECK0024,sup(s20),supS,supS20;locus_tag=b0023 +NC_000913.3 RefSeq CDS 20815 21078 . - 0 ID=cds-NP_414564.1;Parent=gene-b0023;Dbxref=UniProtKB/Swiss-Prot:P0A7U7,Genbank:NP_414564.1,ASAP:ABE-0000082,ECOCYC:EG10919,EcoGene:EG10919,GeneID:944759;Name=NP_414564.1;gbkey=CDS;gene=rpsT;locus_tag=b0023;orig_transcript_id=gnl|b0023|mrna.b0023;product=30S ribosomal subunit protein S20;protein_id=NP_414564.1;transl_table=11 +NC_000913.3 RefSeq gene 21181 21399 . + . ID=gene-b0024;Dbxref=ASAP:ABE-0000089,ECOCYC:G6087,EcoGene:EG14386,GeneID:949128;Name=yaaY;gbkey=Gene;gene=yaaY;gene_biotype=protein_coding;gene_synonym=ECK0025;locus_tag=b0024 +NC_000913.3 RefSeq CDS 21181 21399 . + 0 ID=cds-NP_414565.1;Parent=gene-b0024;Dbxref=UniProtKB/Swiss-Prot:P75620,Genbank:NP_414565.1,ASAP:ABE-0000089,ECOCYC:G6087,EcoGene:EG14386,GeneID:949128;Name=NP_414565.1;gbkey=CDS;gene=yaaY;locus_tag=b0024;orig_transcript_id=gnl|b0024|mrna.b0024;product=DUF2575 domain-containing protein YaaY;protein_id=NP_414565.1;transl_table=11 +NC_000913.3 RefSeq gene 21407 22348 . + . ID=gene-b0025;Dbxref=ASAP:ABE-0000091,ECOCYC:EG11079,EcoGene:EG11079,GeneID:949129;Name=ribF;gbkey=Gene;gene=ribF;gene_biotype=protein_coding;gene_synonym=ECK0026,yaaC;locus_tag=b0025 +NC_000913.3 RefSeq CDS 21407 22348 . + 0 ID=cds-NP_414566.1;Parent=gene-b0025;Dbxref=UniProtKB/Swiss-Prot:P0AG40,Genbank:NP_414566.1,ASAP:ABE-0000091,ECOCYC:EG11079,EcoGene:EG11079,GeneID:949129;Name=NP_414566.1;gbkey=CDS;gene=ribF;locus_tag=b0025;orig_transcript_id=gnl|b0025|mrna.b0025;product=bifunctional riboflavin kinase/FMN adenylyltransferase;protein_id=NP_414566.1;transl_table=11 +NC_000913.3 RefSeq gene 22391 25207 . + . ID=gene-b0026;Dbxref=ASAP:ABE-0000094,ECOCYC:EG10492,EcoGene:EG10492,GeneID:944761;Name=ileS;gbkey=Gene;gene=ileS;gene_biotype=protein_coding;gene_synonym=ECK0027,ilvS;locus_tag=b0026 +NC_000913.3 RefSeq CDS 22391 25207 . + 0 ID=cds-NP_414567.1;Parent=gene-b0026;Dbxref=UniProtKB/Swiss-Prot:P00956,Genbank:NP_414567.1,ASAP:ABE-0000094,ECOCYC:EG10492,EcoGene:EG10492,GeneID:944761;Name=NP_414567.1;gbkey=CDS;gene=ileS;locus_tag=b0026;orig_transcript_id=gnl|b0026|mrna.b0026;product=isoleucine--tRNA ligase;protein_id=NP_414567.1;transl_table=11 +NC_000913.3 RefSeq gene 25207 25701 . + . ID=gene-b0027;Dbxref=ASAP:ABE-0000096,ECOCYC:EG10548,EcoGene:EG10548,GeneID:944800;Name=lspA;gbkey=Gene;gene=lspA;gene_biotype=protein_coding;gene_synonym=ECK0028,lsp;locus_tag=b0027 +NC_000913.3 RefSeq CDS 25207 25701 . + 0 ID=cds-NP_414568.1;Parent=gene-b0027;Dbxref=UniProtKB/Swiss-Prot:P00804,Genbank:NP_414568.1,ASAP:ABE-0000096,ECOCYC:EG10548,EcoGene:EG10548,GeneID:944800;Name=NP_414568.1;gbkey=CDS;gene=lspA;locus_tag=b0027;orig_transcript_id=gnl|b0027|mrna.b0027;product=lipoprotein signal peptidase;protein_id=NP_414568.1;transl_table=11 +NC_000913.3 RefSeq repeat_region 25711 25746 . + . ID=id-62;Note=REP2a;gbkey=repeat_region;rpt_type=other +NC_000913.3 RefSeq repeat_region 25763 25796 . - . ID=id-63;Note=REP2b;gbkey=repeat_region;rpt_type=other +NC_000913.3 RefSeq gene 25826 26275 . + . ID=gene-b0028;Dbxref=ASAP:ABE-0000101,ECOCYC:EG11080,EcoGene:EG11080,GeneID:944807;Name=fkpB;gbkey=Gene;gene=fkpB;gene_biotype=protein_coding;gene_synonym=ECK0029,slpA,yaaD;locus_tag=b0028 +NC_000913.3 RefSeq CDS 25826 26275 . + 0 ID=cds-NP_414569.1;Parent=gene-b0028;Dbxref=UniProtKB/Swiss-Prot:P0AEM0,Genbank:NP_414569.1,ASAP:ABE-0000101,ECOCYC:EG11080,EcoGene:EG11080,GeneID:944807;Name=NP_414569.1;gbkey=CDS;gene=fkpB;locus_tag=b0028;orig_transcript_id=gnl|b0028|mrna.b0028;product=peptidyl-prolyl cis-trans isomerase FkpB;protein_id=NP_414569.1;transl_table=11 +NC_000913.3 RefSeq gene 26277 27227 . + . ID=gene-b0029;Dbxref=ASAP:ABE-0000103,ECOCYC:EG11081,EcoGene:EG11081,GeneID:944777;Name=ispH;gbkey=Gene;gene=ispH;gene_biotype=protein_coding;gene_synonym=ECK0030,lytB,yaaE;locus_tag=b0029 +NC_000913.3 RefSeq CDS 26277 27227 . + 0 ID=cds-NP_414570.1;Parent=gene-b0029;Dbxref=UniProtKB/Swiss-Prot:P62623,Genbank:NP_414570.1,ASAP:ABE-0000103,ECOCYC:EG11081,EcoGene:EG11081,GeneID:944777;Name=NP_414570.1;gbkey=CDS;gene=ispH;locus_tag=b0029;orig_transcript_id=gnl|b0029|mrna.b0029;product=1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase;protein_id=NP_414570.1;transl_table=11 +NC_000913.3 RefSeq gene 27293 28207 . + . ID=gene-b0030;Dbxref=ASAP:ABE-0000109,ECOCYC:EG11082,EcoGene:EG11082,GeneID:944796;Name=rihC;gbkey=Gene;gene=rihC;gene_biotype=protein_coding;gene_synonym=ECK0031,yaaF;locus_tag=b0030 +NC_000913.3 RefSeq CDS 27293 28207 . + 0 ID=cds-NP_414571.1;Parent=gene-b0030;Dbxref=UniProtKB/Swiss-Prot:P22564,Genbank:NP_414571.1,ASAP:ABE-0000109,ECOCYC:EG11082,EcoGene:EG11082,GeneID:944796;Name=NP_414571.1;gbkey=CDS;gene=rihC;locus_tag=b0030;orig_transcript_id=gnl|b0030|mrna.b0030;product=ribonucleoside hydrolase RihC;protein_id=NP_414571.1;transl_table=11 +NC_000913.3 RefSeq gene 28374 29195 . + . ID=gene-b0031;Dbxref=ASAP:ABE-0000112,ECOCYC:EG10206,EcoGene:EG10206,GeneID:944762;Name=dapB;gbkey=Gene;gene=dapB;gene_biotype=protein_coding;gene_synonym=ECK0032;locus_tag=b0031 +NC_000913.3 RefSeq CDS 28374 29195 . + 0 ID=cds-NP_414572.1;Parent=gene-b0031;Dbxref=UniProtKB/Swiss-Prot:P04036,Genbank:NP_414572.1,ASAP:ABE-0000112,ECOCYC:EG10206,EcoGene:EG10206,GeneID:944762;Name=NP_414572.1;gbkey=CDS;gene=dapB;locus_tag=b0031;orig_transcript_id=gnl|b0031|mrna.b0031;product=4-hydroxy-tetrahydrodipicolinate reductase;protein_id=NP_414572.1;transl_table=11 +NC_000913.3 RefSeq gene 29651 30799 . + . ID=gene-b0032;Dbxref=ASAP:ABE-0000118,ECOCYC:EG10134,EcoGene:EG10134,GeneID:949025;Name=carA;gbkey=Gene;gene=carA;gene_biotype=protein_coding;gene_synonym=arg,cap,ECK0033,pyrA;locus_tag=b0032 +NC_000913.3 RefSeq CDS 29651 30799 . + 0 ID=cds-NP_414573.1;Parent=gene-b0032;Dbxref=UniProtKB/Swiss-Prot:P0A6F1,Genbank:NP_414573.1,ASAP:ABE-0000118,ECOCYC:EG10134,EcoGene:EG10134,GeneID:949025;Name=NP_414573.1;gbkey=CDS;gene=carA;locus_tag=b0032;orig_transcript_id=gnl|b0032|mrna.b0032;product=carbamoyl phosphate synthetase subunit alpha;protein_id=NP_414573.1;transl_table=11 +NC_000913.3 RefSeq gene 30817 34038 . + . ID=gene-b0033;Dbxref=ASAP:ABE-0000121,ECOCYC:EG10135,EcoGene:EG10135,GeneID:944775;Name=carB;gbkey=Gene;gene=carB;gene_biotype=protein_coding;gene_synonym=cap,ECK0034,pyrA;locus_tag=b0033 +NC_000913.3 RefSeq CDS 30817 34038 . + 0 ID=cds-NP_414574.1;Parent=gene-b0033;Dbxref=UniProtKB/Swiss-Prot:P00968,Genbank:NP_414574.1,ASAP:ABE-0000121,ECOCYC:EG10135,EcoGene:EG10135,GeneID:944775;Name=NP_414574.1;gbkey=CDS;gene=carB;locus_tag=b0033;orig_transcript_id=gnl|b0033|mrna.b0033;product=carbamoyl phosphate synthetase subunit beta;protein_id=NP_414574.1;transl_table=11 +NC_000913.3 RefSeq gene 34300 34695 . + . ID=gene-b0034;Dbxref=ASAP:ABE-0000125,ECOCYC:G6088,EcoGene:EG13451,GeneID:944795;Name=caiF;gbkey=Gene;gene=caiF;gene_biotype=protein_coding;gene_synonym=ECK0035;locus_tag=b0034 +NC_000913.3 RefSeq CDS 34300 34695 . + 0 ID=cds-NP_414576.4;Parent=gene-b0034;Dbxref=UniProtKB/Swiss-Prot:P0AE58,Genbank:NP_414576.4,ASAP:ABE-0000125,ECOCYC:G6088,EcoGene:EG13451,GeneID:944795;Name=NP_414576.4;gbkey=CDS;gene=caiF;locus_tag=b0034;orig_transcript_id=gnl|b0034|mrna.b0034;product=DNA-binding transcriptional activator CaiF;protein_id=NP_414576.4;transl_table=11 +NC_000913.3 RefSeq repeat_region 34728 34763 . + . ID=id-78;Note=REP3;gbkey=repeat_region;rpt_type=other +NC_000913.3 RefSeq gene 34781 35371 . - . ID=gene-b0035;Dbxref=ASAP:ABE-0000128,ECOCYC:EG12608,EcoGene:EG12608,GeneID:948999;Name=caiE;gbkey=Gene;gene=caiE;gene_biotype=protein_coding;gene_synonym=ECK0036;locus_tag=b0035 +NC_000913.3 RefSeq CDS 34781 35371 . - 0 ID=cds-NP_414577.2;Parent=gene-b0035;Dbxref=UniProtKB/Swiss-Prot:P39206,Genbank:NP_414577.2,ASAP:ABE-0000128,ECOCYC:EG12608,EcoGene:EG12608,GeneID:948999;Name=NP_414577.2;gbkey=CDS;gene=caiE;locus_tag=b0035;orig_transcript_id=gnl|b0035|mrna.b0035;product=putative transferase CaiE;protein_id=NP_414577.2;transl_table=11 +NC_000913.3 RefSeq gene 35377 36162 . - . ID=gene-b0036;Dbxref=ASAP:ABE-0000130,ECOCYC:EG11557,EcoGene:EG11557,GeneID:948995;Name=caiD;gbkey=Gene;gene=caiD;gene_biotype=protein_coding;gene_synonym=ECK0037,yaaL;locus_tag=b0036 +NC_000913.3 RefSeq CDS 35377 36162 . - 0 ID=cds-NP_414578.2;Parent=gene-b0036;Dbxref=UniProtKB/Swiss-Prot:P31551,Genbank:NP_414578.2,ASAP:ABE-0000130,ECOCYC:EG11557,EcoGene:EG11557,GeneID:948995;Name=NP_414578.2;gbkey=CDS;gene=caiD;locus_tag=b0036;orig_transcript_id=gnl|b0036|mrna.b0036;product=crotonobetainyl-CoA hydratase;protein_id=NP_414578.2;transl_table=11 +NC_000913.3 RefSeq gene 36271 37824 . - . ID=gene-b0037;Dbxref=ASAP:ABE-0000133,ECOCYC:EG11558,EcoGene:EG11558,GeneID:944886;Name=caiC;gbkey=Gene;gene=caiC;gene_biotype=protein_coding;gene_synonym=ECK0038,yaaM;locus_tag=b0037 +NC_000913.3 RefSeq CDS 36271 37824 . - 0 ID=cds-NP_414579.4;Parent=gene-b0037;Dbxref=UniProtKB/Swiss-Prot:P31552,Genbank:NP_414579.4,ASAP:ABE-0000133,ECOCYC:EG11558,EcoGene:EG11558,GeneID:944886;Name=NP_414579.4;gbkey=CDS;gene=caiC;locus_tag=b0037;orig_transcript_id=gnl|b0037|mrna.b0037;product=carnitine-CoA ligase;protein_id=NP_414579.4;transl_table=11 +NC_000913.3 RefSeq gene 37898 39115 . - . ID=gene-b0038;Dbxref=ASAP:ABE-0000136,ECOCYC:EG11559,EcoGene:EG11559,GeneID:948997;Name=caiB;gbkey=Gene;gene=caiB;gene_biotype=protein_coding;gene_synonym=ECK0039,yaaN;locus_tag=b0038 +NC_000913.3 RefSeq CDS 37898 39115 . - 0 ID=cds-NP_414580.1;Parent=gene-b0038;Dbxref=UniProtKB/Swiss-Prot:P31572,Genbank:NP_414580.1,ASAP:ABE-0000136,ECOCYC:EG11559,EcoGene:EG11559,GeneID:948997;Name=NP_414580.1;gbkey=CDS;gene=caiB;locus_tag=b0038;orig_transcript_id=gnl|b0038|mrna.b0038;product=gamma-butyrobetainyl-CoA:carnitine CoA transferase;protein_id=NP_414580.1;transl_table=11 +NC_000913.3 RefSeq repeat_region 39152 39185 . + . ID=id-87;Note=REP4a;gbkey=repeat_region;rpt_type=other +NC_000913.3 RefSeq repeat_region 39198 39233 . - . ID=id-88;Note=REP4b;gbkey=repeat_region;rpt_type=other +NC_000913.3 RefSeq gene 39244 40386 . - . ID=gene-b0039;Dbxref=ASAP:ABE-0000139,ECOCYC:EG11560,EcoGene:EG11560,GeneID:949064;Name=caiA;gbkey=Gene;gene=caiA;gene_biotype=protein_coding;gene_synonym=ECK0040,yaaO;locus_tag=b0039 +NC_000913.3 RefSeq CDS 39244 40386 . - 0 ID=cds-NP_414581.1;Parent=gene-b0039;Dbxref=UniProtKB/Swiss-Prot:P60584,Genbank:NP_414581.1,ASAP:ABE-0000139,ECOCYC:EG11560,EcoGene:EG11560,GeneID:949064;Name=NP_414581.1;gbkey=CDS;gene=caiA;locus_tag=b0039;orig_transcript_id=gnl|b0039|mrna.b0039;product=crotonobetainyl-CoA reductase;protein_id=NP_414581.1;transl_table=11 +NC_000913.3 RefSeq gene 40417 41931 . - . ID=gene-b0040;Dbxref=ASAP:ABE-0000141,ECOCYC:EG11561,EcoGene:EG11561,GeneID:944765;Name=caiT;gbkey=Gene;gene=caiT;gene_biotype=protein_coding;gene_synonym=ECK0041,yaaP;locus_tag=b0040 +NC_000913.3 RefSeq CDS 40417 41931 . - 0 ID=cds-NP_414582.1;Parent=gene-b0040;Dbxref=UniProtKB/Swiss-Prot:P31553,Genbank:NP_414582.1,ASAP:ABE-0000141,ECOCYC:EG11561,EcoGene:EG11561,GeneID:944765;Name=NP_414582.1;gbkey=CDS;gene=caiT;locus_tag=b0040;orig_transcript_id=gnl|b0040|mrna.b0040;product=L-carnitine:gamma-butyrobetaine antiporter;protein_id=NP_414582.1;transl_table=11