Mercurial > repos > iuc > circos
diff macros.xml @ 4:184dfd9e113d draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit f5db2969e8602eff32ec799d237875b911578fe5"
author | iuc |
---|---|
date | Thu, 09 Jan 2020 10:03:02 -0500 |
parents | fd59d783248a |
children | a64dc31ab7f2 |
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--- a/macros.xml Mon Dec 02 08:14:29 2019 -0500 +++ b/macros.xml Thu Jan 09 10:03:02 2020 -0500 @@ -2,7 +2,7 @@ <macros> <token name="@CIRCOS_VERSION@">0.69.8</token> - <token name="@WRAPPER_VERSION@">@CIRCOS_VERSION@+galaxy2</token> + <token name="@WRAPPER_VERSION@">@CIRCOS_VERSION@+galaxy3</token> <xml name="requirements"> <requirements> @@ -141,6 +141,11 @@ </param> </xml> + <xml name="zdepth"> + <param name="zdepth" type="float" value="" optional="true" label="Z-depth" + help="Optional. Datasets with a higher z-depth value are drawn on top of data sets with a lower value. Only useful if plotting multiple tracks"/> + </xml> + <xml name="font_select" token_normal="true" token_bold="false"> @@ -159,8 +164,8 @@ <xml name="axes"> <section name="sec_axes" title="Axes"> <repeat name="axes" title="Axis"> - <param name="y0" type="float" value="0" min="0" max="1" label="Inside Radius" help="Value must be between 1 (outer edge of track) and 0 (inner edge of the track)"/> - <param name="y1" type="float" value="1" min="0" max="1" label="Outside Radius" help="Value must be between 1 (outer edge of track) and 0 (inner edge of the track)"/> + <param name="y0" type="float" value="0" label="Inside Radius" help="Values are according to minimum and maximum values of dataset. E.g. if your dataset goes from -10 to 10, y0 should be -10"/> + <param name="y1" type="float" value="1" label="Outside Radius" help="Values are according to minimum and maximum values of dataset. E.g. if your dataset goes from -10 to 10, y1 should be 10"/> <expand macro="circos_color"/> <param name="thickness" type="integer" value="1" label="Thickness"/> @@ -195,7 +200,13 @@ <when value="1"> </when> <when value="on"> - <param name="on_genomes" type="text" label="Comma separated list of contig IDs"/> + <param name="on_genomes" type="text" label="Contig IDs" help="Pipe | separated list of contig IDs"> + <sanitizer> + <valid initial="string.letters,string.digits"> + <add value="|" /> + </valid> + </sanitizer> + </param> </when> <when value="pos"> <param name="pos_gt" type="float" label="Greater than this base" optional="true"/> @@ -232,7 +243,12 @@ </sanitizer> </param> - <param name="varvalue" type="text" label="Qualifier value to compare against"/> + <param name="varvalue" type="text" label="Qualifier value to compare against"> + <sanitizer> + <valid initial="string.letters,string.digits"> + </valid> + </sanitizer> + </param> </when> </conditional> </repeat>