Mercurial > repos > iuc > circos
diff macros_conffiles.xml @ 4:184dfd9e113d draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit f5db2969e8602eff32ec799d237875b911578fe5"
| author | iuc |
|---|---|
| date | Thu, 09 Jan 2020 10:03:02 -0500 |
| parents | 014a21767ac4 |
| children | a64dc31ab7f2 |
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--- a/macros_conffiles.xml Mon Dec 02 08:14:29 2019 -0500 +++ b/macros_conffiles.xml Thu Jan 09 10:03:02 2020 -0500 @@ -163,10 +163,12 @@ <highlights> #for $hi, $data in enumerate($sec_highlight.data): <highlight> - file = data/highlight-${hi}.txt # ${data.data_source.element_identifier} - r1 = ${data.r1}r - r0 = ${data.r0}r - fill_color = $circosColor($data.fill_color) + file = data/highlight-${hi}.txt # ${data.data_source.element_identifier} + r1 = ${data.r1}r + r0 = ${data.r0}r + fill_color = $circosColorAlpha($data.fill_color) + stroke_color = $circosColorAlpha($data.stroke_color) + stroke_thickness = ${data.stroke_thickness} <rules> #for $rule in $data.sec_rule.rules: @@ -175,8 +177,7 @@ #if str($condition.application.application_select) == "1": condition = 1 #elif str($condition.application.application_select) == "on": - #set on_str = ' '.join([ "on(%s)" % $chr.strip() for $chr in $condition.application.on_genomes.split(',') ]) - condition = $on_str + condition = on($condition.application.on_genomes) #elif str($condition.application.application_select) == "pos": #if $condition.application.pos_gt: condition = var(start) > $condition.application.pos_gt @@ -416,7 +417,7 @@ <links> #for $hi, $data in enumerate($sec_links.data): <link> - file = data/links-${hi}.txt + file = data/links-${hi}.txt # ${data.data_source.element_identifier} radius = ${data.radius}r ribbon = ${data.linktype.ribbon} #if $data.linktype.ribbon == 'yes'