Mercurial > repos > iuc > circos

diff process-cytogenetic-bands.py @ 13:c4bde687c846 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit 0cfd88d16b0b20a66d4b21b037ddee6a8c440d88
author iuc
date Wed, 12 Apr 2023 15:09:05 +0000
parents 014a21767ac4
children
line wrap: on
line diff
--- a/process-cytogenetic-bands.py	Mon Nov 22 12:23:12 2021 +0000
+++ b/process-cytogenetic-bands.py	Wed Apr 12 15:09:05 2023 +0000
@@ -29,7 +29,7 @@
         if line.startswith("#"):
             continue
 
-        lineData = dict(zip(COLS, line.split()))
+        lineData = dict(list(zip(COLS, line.split())))
         color = lineData.get("itemRgb", "gpos50")
 
         if color not in colormap:
@@ -47,7 +47,7 @@
                 # Does not look like an int
                 continue
 
-            colormap[color] = "gx-karyotype-%s" % len(colormap.keys())
+            colormap[color] = "gx-karyotype-%s" % len(list(colormap.keys()))
 
             sys.stderr.write(
                 "{colorName} = {color}\n".format(colorName=colormap[color], color=color)