<?xml version="1.0"?>
<tool id="circos_wiggle_to_scatter" name="Circos: bigWig to Scatter" version="@WRAPPER_VERSION@">
    <description>reformats bigWig files to prepare for Circos 2d scatter/line/histogram plots</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <edam_topics>
        <edam_topic>topic_0797</edam_topic>
        <edam_topic>topic_0092</edam_topic>
    </edam_topics>
    <edam_operations>
        <edam_operation>operation_3434</edam_operation>
    </edam_operations>
    <expand macro="requirements" />
    <command detect_errors="exit_code"><![CDATA[
python '$__tool_directory__/scatter-from-wiggle.py' '$input' > '$output'
    ]]></command>
    <inputs>
        <param name="input" type="data" format="bigwig" label="Data file" />
    </inputs>
    <outputs>
        <data name="output" format="tabular" />
    </outputs>
    <tests>
        <test>
            <param name="input" value="scatter/1.bw" ftype="bigwig" />
            <output name="output" file="scatter/1.out" ftype="tabular" />
        </test>
    </tests>
    <help><![CDATA[
Converts standard bigWig files into a format appropriate for Circos scatter/line/histogram plot tracks.

If you need to process bedgraph, please convert those to bigwig first.
    ]]></help>
    <expand macro="citations" />
</tool>