Mercurial > repos > iuc > circos
view karyotype-from-fasta.py @ 11:31a35811dda6 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit b9ec351920dbc83fa14bd1f8cfdd0a6a19b89473"
author | iuc |
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date | Tue, 16 Nov 2021 09:20:08 +0000 |
parents | e6cbe3190642 |
children |
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#!/usr/bin/env python import sys from Bio import SeqIO # Process fasta data, extracting only headers for idx, seq in enumerate(SeqIO.parse(sys.argv[1], "fasta")): sys.stdout.write( "chr - {seq_id} {seq_id} 0 {length} chr{idx}color\n".format( seq_id=seq.id, idx=idx, length=len(seq) ) )