Mercurial > repos > iuc > circos
view scatter-from-wiggle.py @ 11:31a35811dda6 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit b9ec351920dbc83fa14bd1f8cfdd0a6a19b89473"
author | iuc |
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date | Tue, 16 Nov 2021 09:20:08 +0000 |
parents | 014a21767ac4 |
children |
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#!/usr/bin/env python import logging import sys import pyBigWig logging.basicConfig(level=logging.INFO) log = logging.getLogger() if __name__ == "__main__": bw = pyBigWig.open(sys.argv[1]) for chrom in sorted(bw.chroms().keys()): for (start, end, value) in bw.intervals(chrom): sys.stdout.write("%s\t%s\t%s\t%s\n" % (chrom, start, end, value))