Mercurial > repos > iuc > circos
view karyotype-from-fasta.py @ 7:4b519282a05b draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit ef20b4968a6d00c49209de6b723f8b96d8bd128a"
author | iuc |
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date | Mon, 25 May 2020 10:52:02 -0400 |
parents | |
children | e6cbe3190642 |
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#!/usr/bin/env python import sys from Bio import SeqIO # Process fasta data, extracting only headers for idx, seq in enumerate(SeqIO.parse(sys.argv[1], "fasta")): sys.stdout.write( "chr - {seq_id} {seq_id} 0 {length} chr{idx}color\n".format( seq_id=seq.id, idx=idx, length=len(seq) ) )