Mercurial > repos > iuc > circos
view colours/cg.conf @ 5:a64dc31ab7f2 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit 39a0176dab234a07118a79ac44ca7d79469d3b91"
author | iuc |
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date | Thu, 23 Jan 2020 07:27:22 -0500 |
parents | 014a21767ac4 |
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# RGB color definition. Colors are refered to within configuration files # by their name. In order to use a color, you must define it here. # # e.g. if you really must use 'bisque', then add # # bisque = 255,228,196 # # Many useful colors are already defined. In general, given a HUE, these # colors are defined # # vlHUE (very light HUE, e.g. vlred) # lHUE (light HUE, e.g. red) # HUE (e.g. red) # dHUE (dark HUE, e.g. dred) # # In addition to hues, two other color groups are defined. # # - cytogenetic band colors (e.g. gposNNN, acen, stalk, etc.) which # correspond to colors on ideogram bands # - UCSC chromosome color palette (e.g. chrNN, chrUn, chrNA) optblue = 55,133,221 optgreen = 55,221,125 optyellow = 221,215,55 optorange = 221,164,55 optred = 221,55,55 optviolet = 145,55,221 optpurple = 219,55,221 white = 255,255,255 vvvvlgrey = 250,250,250 vvvlgrey = 240,240,240 vvlgrey = 230,230,230 vlgrey = 220,220,220 lgrey = 210,210,210 grey = 200,200,200 dgrey = 170,170,170 vdgrey = 140,140,140 vvdgrey = 100,100,100 vvvdgrey = 70,70,70 vvvvdgrey = 40,40,40 black = 0,0,0 vlred = 255,193,200 lred = 255,122,137 red = 247,42,66 dred = 205,51,69 vlgreen = 204,255,218 lgreen = 128,255,164 green = 51,204,94 dgreen = 38,153,71 vlblue = 128,176,255 lblue = 64,137,255 blue = 54,116,217 dblue = 38,82,153 vlpurple= 242,128,255 lpurple = 236,64,255 purple = 189,51,204 dpurple = 118,32,128 vlyellow = 255,253,202 lyellow = 255,252,150 yellow = 255,255,0 dyellow = 191,186,48 lime = 186,255,0 vlorange = 255,228,193 lorange = 255,187,110 orange = 255,136,0 dorange = 221,143,55 pink = 255,105,180 # CGI colors # bluegray cgi1 = 58,111,143 # orange cgi2 = 240,142,79 # mediumgray cgi3 = 92,112,124 # green cgi4 = 71,170,66 # mustard cgi5 = 193,202,92 # dullred cgi6 = 217,83,30 # lightgray cgi7 = 174,185,191 # darkturquoiseblue cgi8 = 0,138,176 # purpleblue cgi9 = 87,96,172 # functional colors frameshift = 217,83,30 disrupt = 217,83,30 nonsense = 217,83,30 misstart = 217,83,30 nonstop = 87,96,172 missense = 87,96,172 insert = 87,96,172 delete = 87,96,172 # karyotype colors gpos100 = 0,0,0 gpos = 0,0,0 gpos75 = 130,130,130 gpos66 = 160,160,160 gpos50 = 200,200,200 gpos33 = 210,210,210 gpos25 = 200,200,200 gvar = 220,220,220 gneg = 255,255,255 acen = 217,47,39 stalk = 100,127,164 # others select = 135,177,255 # new york times cmyk-safe # roygbiv - normal nyt_blue = 104,152,178 nyt_green = 137,129,96 nyt_yellow = 241,221,117 nyt_orange = 230,146,57 nyt_red = 217,47,39 # chromosome color map (UCSC) chr1 = 153,102,0 chr2 = 102,102,0 chr3 = 153,153,30 chr4 = 204,0,0 chr5 = 255,0,0 chr6 = 255,0,204 chr7 = 255,204,204 chr8 = 255,153,0 chr9 = 255,204,0 chr10 = 255,255,0 chr11 = 204,255,0 chr12 = 0,255,0 chr13 = 53,128,0 chr14 = 0,0,204 chr15 = 102,153,255 chr16 = 153,204,255 chr17 = 0,255,255 chr18 = 204,255,255 chr19 = 153,0,204 chr20 = 204,51,255 chr21 = 204,153,255 chr22 = 102,102,102 chr23 = 153,153,153 chrX = 153,153,153 chr24 = 204,204,204 chrY = 204,204,204 chrM = 204,204,153 chr0 = 204,204,153 chrUn = 121,204,61 chrNA = 255,255,255