Mercurial > repos > iuc > circos
view genome-lengths-to-karyotype.py @ 5:a64dc31ab7f2 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit 39a0176dab234a07118a79ac44ca7d79469d3b91"
author | iuc |
---|---|
date | Thu, 23 Jan 2020 07:27:22 -0500 |
parents | 014a21767ac4 |
children | 740057a5126d |
line wrap: on
line source
#!/usr/bin/env python import csv import sys idx = 0 with open(sys.argv[1], "r") as csvfile: spamreader = csv.reader(csvfile, delimiter="\t", quotechar='"') for row in spamreader: if len(row) < 2: continue seq_id = row[0] length = row[1] sys.stdout.write( "chr - {seq_id} {seq_id} 0 {length} {theme}-{color}\n".format( seq_id=seq_id, idx=idx, length=length, color=((idx + 1) % 12), theme=sys.argv[2], ) ) idx += 1