Mercurial > repos > iuc > circos
view karyotype-from-lengths.py @ 9:df7356989ac1 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit 041a4d1618298f540e3917f00781e09ec7d71b75"
author | iuc |
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date | Mon, 23 Nov 2020 10:56:29 +0000 |
parents | e6cbe3190642 |
children |
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#!/usr/bin/env python import csv import sys idx = 0 with open(sys.argv[1], "r") as csvfile: spamreader = csv.reader(csvfile, delimiter="\t", quotechar='"') for row in spamreader: if len(row) < 2: continue seq_id = row[0] length = row[1] sys.stdout.write( "chr - {seq_id} {seq_id} 0 {length} chr{idx}color\n".format( seq_id=seq_id, idx=idx, length=length ) ) idx += 1