Mercurial > repos > iuc > circos

view scatter-from-wiggle.py @ 9:df7356989ac1 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit 041a4d1618298f540e3917f00781e09ec7d71b75"
author iuc
date Mon, 23 Nov 2020 10:56:29 +0000
parents 014a21767ac4
children
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#!/usr/bin/env python
import logging
import sys

import pyBigWig

logging.basicConfig(level=logging.INFO)
log = logging.getLogger()

if __name__ == "__main__":
    bw = pyBigWig.open(sys.argv[1])
    for chrom in sorted(bw.chroms().keys()):
        for (start, end, value) in bw.intervals(chrom):
            sys.stdout.write("%s\t%s\t%s\t%s\n" % (chrom, start, end, value))