Mercurial > repos > iuc > circos
view stack-histogram.py @ 8:e6cbe3190642 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit cc96dd4a8aef7d0b6d3057024af0344ab8a9410f"
author | iuc |
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date | Fri, 12 Jun 2020 10:39:58 -0400 |
parents | 4b519282a05b |
children | c4bde687c846 |
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#!/usr/bin/env python import logging import sys import pyBigWig logging.basicConfig(level=logging.INFO) log = logging.getLogger() if __name__ == "__main__": files = sys.argv[1:] bws = [pyBigWig.open(x) for x in files] # obtain some chroms. Hope all sets are identical! k = bws[0].chroms().keys() # do magic? # nah. # just assert that intervals are identical. # and crash otherwise. # sorry not sorry. for chrom in k: for interval_set in zip(*[bw.intervals(chrom) for bw in bws]): (start, end) = interval_set[0][0:2] values = ",".join(map(str, [x[2] for x in interval_set])) sys.stdout.write("%s\t%s\t%s\t%s\n" % (chrom, start, end, values))