Mercurial > repos > iuc > circos

changeset 9:df7356989ac1 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit 041a4d1618298f540e3917f00781e09ec7d71b75"
author iuc
date Mon, 23 Nov 2020 10:56:29 +0000
parents e6cbe3190642
children 7f13dc906cb9
files alignments-to-links.xml binlinks.xml bundlelinks.xml circos.xml gc_skew.xml resample.xml scatter-from-wiggle.xml stack-histogram.xml tableviewer.xml text-from-interval.xml tiles-from-interval.xml
diffstat 11 files changed, 77 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/alignments-to-links.xml	Fri Jun 12 10:39:58 2020 -0400
+++ b/alignments-to-links.xml	Mon Nov 23 10:56:29 2020 +0000
@@ -6,6 +6,13 @@
     </macros>
     <expand macro="requirements">
     </expand>
+    <edam_topics>
+        <edam_topic>topic_0797</edam_topic>
+        <edam_topic>topic_0092</edam_topic>
+    </edam_topics>
+    <edam_operations>
+        <edam_operation>operation_1812</edam_operation>
+    </edam_operations>
     <command detect_errors="exit_code"><![CDATA[
 python '$__tool_directory__/alignments-to-links.py' '$input' '$input.ext' > '$output'
     ]]></command>
--- a/binlinks.xml	Fri Jun 12 10:39:58 2020 -0400
+++ b/binlinks.xml	Mon Nov 23 10:56:29 2020 +0000
@@ -4,6 +4,13 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <edam_topics>
+        <edam_topic>topic_0797</edam_topic>
+        <edam_topic>topic_0092</edam_topic>
+    </edam_topics>
+    <edam_operations>
+        <edam_operation>operation_3436</edam_operation>
+    </edam_operations>
     <expand macro="requirements" />
     <command detect_errors="exit_code"><![CDATA[
 binlinks
--- a/bundlelinks.xml	Fri Jun 12 10:39:58 2020 -0400
+++ b/bundlelinks.xml	Mon Nov 23 10:56:29 2020 +0000
@@ -5,6 +5,13 @@
         <import>macros.xml</import>
     </macros>
     <expand macro="requirements" />
+    <edam_topics>
+        <edam_topic>topic_0797</edam_topic>
+        <edam_topic>topic_0092</edam_topic>
+    </edam_topics>
+    <edam_operations>
+        <edam_operation>operation_3436</edam_operation>
+    </edam_operations>
     <command detect_errors="exit_code"><![CDATA[
 bundlelinks
     #if $max_gap:
--- a/circos.xml	Fri Jun 12 10:39:58 2020 -0400
+++ b/circos.xml	Mon Nov 23 10:56:29 2020 +0000
@@ -12,6 +12,13 @@
         <import>macros_tests.xml</import>
     </macros>
     <expand macro="requirements"/>
+    <edam_topics>
+        <edam_topic>topic_0797</edam_topic>
+        <edam_topic>topic_0092</edam_topic>
+    </edam_topics>
+    <edam_operations>
+        <edam_operation>operation_0337</edam_operation>
+    </edam_operations>
     <version_command>circos --version</version_command>
     <stdio>
       <!-- Anything other than zero is an error -->
--- a/gc_skew.xml	Fri Jun 12 10:39:58 2020 -0400
+++ b/gc_skew.xml	Mon Nov 23 10:56:29 2020 +0000
@@ -6,6 +6,13 @@
     </macros>
     <expand macro="requirements">
     </expand>
+    <edam_topics>
+        <edam_topic>topic_0797</edam_topic>
+        <edam_topic>topic_0092</edam_topic>
+    </edam_topics>
+    <edam_operations>
+        <edam_operation>operation_0262</edam_operation>
+    </edam_operations>
     <command detect_errors="exit_code"><![CDATA[
 ln -s -f
 #if $reference_genome.reference_genome_source == "history"
--- a/resample.xml	Fri Jun 12 10:39:58 2020 -0400
+++ b/resample.xml	Mon Nov 23 10:56:29 2020 +0000
@@ -5,6 +5,13 @@
         <import>macros.xml</import>
     </macros>
     <expand macro="requirements" />
+    <edam_topics>
+        <edam_topic>topic_0797</edam_topic>
+        <edam_topic>topic_0092</edam_topic>
+    </edam_topics>
+    <edam_operations>
+        <edam_operation>operation_3436</edam_operation>
+    </edam_operations>
     <command detect_errors="exit_code"><![CDATA[
 resample
     -bin '$bins'
--- a/scatter-from-wiggle.xml	Fri Jun 12 10:39:58 2020 -0400
+++ b/scatter-from-wiggle.xml	Mon Nov 23 10:56:29 2020 +0000
@@ -6,6 +6,13 @@
     </macros>
     <expand macro="requirements">
     </expand>
+    <edam_topics>
+        <edam_topic>topic_0797</edam_topic>
+        <edam_topic>topic_0092</edam_topic>
+    </edam_topics>
+    <edam_operations>
+        <edam_operation>operation_3434</edam_operation>
+    </edam_operations>
     <command detect_errors="exit_code"><![CDATA[
 python '$__tool_directory__/scatter-from-wiggle.py' '$input' > '$output'
     ]]></command>
--- a/stack-histogram.xml	Fri Jun 12 10:39:58 2020 -0400
+++ b/stack-histogram.xml	Mon Nov 23 10:56:29 2020 +0000
@@ -6,6 +6,13 @@
     </macros>
     <expand macro="requirements">
     </expand>
+    <edam_topics>
+        <edam_topic>topic_0797</edam_topic>
+        <edam_topic>topic_0092</edam_topic>
+    </edam_topics>
+    <edam_operations>
+        <edam_operation>operation_0335</edam_operation>
+    </edam_operations>
     <command detect_errors="exit_code"><![CDATA[
 python
     '$__tool_directory__/stack-histogram.py'
--- a/tableviewer.xml	Fri Jun 12 10:39:58 2020 -0400
+++ b/tableviewer.xml	Mon Nov 23 10:56:29 2020 +0000
@@ -4,6 +4,13 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <edam_topics>
+        <edam_topic>topic_0797</edam_topic>
+        <edam_topic>topic_0092</edam_topic>
+    </edam_topics>
+    <edam_operations>
+        <edam_operation>operation_0337</edam_operation>
+    </edam_operations>
     <expand macro="requirements" />
     <command detect_errors="exit_code"><![CDATA[
 mkdir -p circos/data/ &&
--- a/text-from-interval.xml	Fri Jun 12 10:39:58 2020 -0400
+++ b/text-from-interval.xml	Mon Nov 23 10:56:29 2020 +0000
@@ -6,6 +6,13 @@
     </macros>
     <expand macro="requirements">
     </expand>
+    <edam_topics>
+        <edam_topic>topic_0797</edam_topic>
+        <edam_topic>topic_0092</edam_topic>
+    </edam_topics>
+    <edam_operations>
+        <edam_operation>operation_3434</edam_operation>
+    </edam_operations>
     <command detect_errors="exit_code"><![CDATA[
 python
 #if $ref.ref_source == 'gff3':
--- a/tiles-from-interval.xml	Fri Jun 12 10:39:58 2020 -0400
+++ b/tiles-from-interval.xml	Mon Nov 23 10:56:29 2020 +0000
@@ -6,6 +6,13 @@
     </macros>
     <expand macro="requirements">
     </expand>
+    <edam_topics>
+        <edam_topic>topic_0797</edam_topic>
+        <edam_topic>topic_0092</edam_topic>
+    </edam_topics>
+    <edam_operations>
+        <edam_operation>operation_3434</edam_operation>
+    </edam_operations>
     <command detect_errors="exit_code"><![CDATA[
 python
 #if $ref.ref_source == 'gff3':