Mercurial > repos > iuc > clair3

annotate tool-data/all_fasta.loc.sample @ 1:63e02ef6e153 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 05505898035b41c07461dc0eecec61699ecbcf41
author iuc
date Fri, 28 Oct 2022 20:58:30 +0000
parents 44f6ec903688
children 3843a30053ee
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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44f6ec903688 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 9968295e33bad5323ac9cbff8f64c2db35189a5f
iuc
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1 #This file lists the locations and dbkeys of all the fasta files
44f6ec903688 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 9968295e33bad5323ac9cbff8f64c2db35189a5f
iuc
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2 #under the "genome" directory (a directory that contains a directory
44f6ec903688 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 9968295e33bad5323ac9cbff8f64c2db35189a5f
iuc
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3 #for each build). The script extract_fasta.py will generate the file
44f6ec903688 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 9968295e33bad5323ac9cbff8f64c2db35189a5f
iuc
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4 #all_fasta.loc. This file has the format (white space characters are
44f6ec903688 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 9968295e33bad5323ac9cbff8f64c2db35189a5f
iuc
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5 #TAB characters):
44f6ec903688 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 9968295e33bad5323ac9cbff8f64c2db35189a5f
iuc
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6 #
44f6ec903688 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 9968295e33bad5323ac9cbff8f64c2db35189a5f
iuc
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7 #<unique_build_id> <display_name> <file_path>
44f6ec903688 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 9968295e33bad5323ac9cbff8f64c2db35189a5f
iuc
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8 #
44f6ec903688 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 9968295e33bad5323ac9cbff8f64c2db35189a5f
iuc
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9 #So, all_fasta.loc could look something like this:
44f6ec903688 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 9968295e33bad5323ac9cbff8f64c2db35189a5f
iuc
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10 #test1 Test-Genome ./test-data/test1.fa