annotate test-data/all_fasta.loc @ 3:3843a30053ee draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 79c3c1123428c177bf4a8c38260232810457845d
author iuc
date Mon, 09 Sep 2024 09:10:43 +0000
parents 44f6ec903688
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
44f6ec903688 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 9968295e33bad5323ac9cbff8f64c2db35189a5f
iuc
parents:
diff changeset
1 #This file lists the locations and dbkeys of all the fasta files
44f6ec903688 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 9968295e33bad5323ac9cbff8f64c2db35189a5f
iuc
parents:
diff changeset
2 #under the "genome" directory (a directory that contains a directory
44f6ec903688 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 9968295e33bad5323ac9cbff8f64c2db35189a5f
iuc
parents:
diff changeset
3 #for each build). The script extract_fasta.py will generate the file
44f6ec903688 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 9968295e33bad5323ac9cbff8f64c2db35189a5f
iuc
parents:
diff changeset
4 #all_fasta.loc. This file has the format (white space characters are
44f6ec903688 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 9968295e33bad5323ac9cbff8f64c2db35189a5f
iuc
parents:
diff changeset
5 #TAB characters):
44f6ec903688 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 9968295e33bad5323ac9cbff8f64c2db35189a5f
iuc
parents:
diff changeset
6 #
3
3843a30053ee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 79c3c1123428c177bf4a8c38260232810457845d
iuc
parents: 0
diff changeset
7 #<unique_build_id> <dbkey> <display_name> <file_path>
0
44f6ec903688 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 9968295e33bad5323ac9cbff8f64c2db35189a5f
iuc
parents:
diff changeset
8 #
44f6ec903688 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 9968295e33bad5323ac9cbff8f64c2db35189a5f
iuc
parents:
diff changeset
9 #So, all_fasta.loc could look something like this:
3
3843a30053ee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 79c3c1123428c177bf4a8c38260232810457845d
iuc
parents: 0
diff changeset
10 test1 test1 "Test Genome" ${__HERE__}/test1.fasta