Mercurial > repos > iuc > clair3
changeset 3:3843a30053ee draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 79c3c1123428c177bf4a8c38260232810457845d
| author | iuc |
|---|---|
| date | Mon, 09 Sep 2024 09:10:43 +0000 |
| parents | c8ba8286e7c0 |
| children | |
| files | clair3.xml test-data/all_fasta.loc tool-data/all_fasta.loc.sample tool_data_table_conf.xml.sample tool_data_table_conf.xml.test |
| diffstat | 5 files changed, 7 insertions(+), 7 deletions(-) [+] |
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--- a/clair3.xml Tue Jul 30 14:23:36 2024 +0000 +++ b/clair3.xml Mon Sep 09 09:10:43 2024 +0000 @@ -2,7 +2,7 @@ <description>germline small variant caller for long-reads</description> <macros> <token name="@TOOL_VERSION@">1.0.8</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> </macros> <xrefs> <xref type='bio.tools'>clair3</xref>
--- a/test-data/all_fasta.loc Tue Jul 30 14:23:36 2024 +0000 +++ b/test-data/all_fasta.loc Mon Sep 09 09:10:43 2024 +0000 @@ -4,7 +4,7 @@ #all_fasta.loc. This file has the format (white space characters are #TAB characters): # -#<unique_build_id> <display_name> <file_path> +#<unique_build_id> <dbkey> <display_name> <file_path> # #So, all_fasta.loc could look something like this: -test1 "Test Genome" ${__HERE__}/test1.fasta +test1 test1 "Test Genome" ${__HERE__}/test1.fasta
--- a/tool-data/all_fasta.loc.sample Tue Jul 30 14:23:36 2024 +0000 +++ b/tool-data/all_fasta.loc.sample Mon Sep 09 09:10:43 2024 +0000 @@ -4,7 +4,7 @@ #all_fasta.loc. This file has the format (white space characters are #TAB characters): # -#<unique_build_id> <display_name> <file_path> +#<unique_build_id> <dbkey> <display_name> <file_path> # #So, all_fasta.loc could look something like this: -#test1 Test-Genome ./test-data/test1.fa +#test1 test1 Test-Genome ./test-data/test1.fa
--- a/tool_data_table_conf.xml.sample Tue Jul 30 14:23:36 2024 +0000 +++ b/tool_data_table_conf.xml.sample Mon Sep 09 09:10:43 2024 +0000 @@ -6,7 +6,7 @@ <file path="tool-data/model.loc" /> </table> <table name="all_fasta" comment_char="#"> - <columns>value, name, path</columns> + <columns>value, dbkey, name, path</columns> <file path="tool-data/all_fasta.loc" /> </table> </tables>
--- a/tool_data_table_conf.xml.test Tue Jul 30 14:23:36 2024 +0000 +++ b/tool_data_table_conf.xml.test Mon Sep 09 09:10:43 2024 +0000 @@ -7,7 +7,7 @@ </table> <!-- Locations of reference genome files in fasta format --> <table name="all_fasta" comment_char="#"> - <columns>value, name, path</columns> + <columns>value, dbkey, name, path</columns> <file path="${__HERE__}/test-data/all_fasta.loc" /> </table> </tables>