Mercurial > repos > iuc > cnvkit_batch

comparison batch.xml @ 2:ec07e22c41f8 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit commit bced16a45d19b243a244a093c3b3504b2640d5e0
author iuc
date Mon, 22 Apr 2024 17:44:06 +0000
parents 4653aeb60243
children 97d2b6742760
comparison
equal deleted inserted replaced
1:4653aeb60243 2:ec07e22c41f8
174 <assert_contents><has_text text="chromosome"/></assert_contents> 174 <assert_contents><has_text text="chromosome"/></assert_contents>
175 </output> 175 </output>
176 <output name="out_capture_antitarget" file="capture.antitarget.bed" /> 176 <output name="out_capture_antitarget" file="capture.antitarget.bed" />
177 <output name="out_control_targetcoverage" file="normal.targetcoverage.cnn" /> 177 <output name="out_control_targetcoverage" file="normal.targetcoverage.cnn" />
178 <output name="out_control_antitargetcoverage" file="normal.antitargetcoverage.cnn" /> 178 <output name="out_control_antitargetcoverage" file="normal.antitargetcoverage.cnn" />
179 <output name="out_reference_cnn" file="reference.cnn" /> 179 <output name="out_reference_cnn" file="reference.cnn" ftype="tabular" compare="sim_size">
180 <assert_contents><has_size value="3000" delta="2000" /></assert_contents>
181 </output>
180 <output name="out_capture_target"> 182 <output name="out_capture_target">
181 <assert_contents><has_text_matching expression="chrM"/></assert_contents> 183 <assert_contents><has_text_matching expression="chrM"/></assert_contents>
182 </output> 184 </output>
183 <output name="out_sample_scatter_png" file="tumor-scatter.png" ftype="png" compare="sim_size"> 185 <output name="out_sample_scatter_png" file="tumor-scatter.png" ftype="png" compare="sim_size">
184 <assert_contents><has_size value="13000" delta="3000" /></assert_contents> 186 <assert_contents><has_size value="13000" delta="3000" /></assert_contents>
215 <assert_contents><has_text text="chromosome"/></assert_contents> 217 <assert_contents><has_text text="chromosome"/></assert_contents>
216 </output> 218 </output>
217 <output name="out_capture_antitarget" file="capture.antitarget.bed" /> 219 <output name="out_capture_antitarget" file="capture.antitarget.bed" />
218 <output name="out_control_targetcoverage" file="normal.targetcoverage.cnn" /> 220 <output name="out_control_targetcoverage" file="normal.targetcoverage.cnn" />
219 <output name="out_control_antitargetcoverage" file="normal.antitargetcoverage.cnn" /> 221 <output name="out_control_antitargetcoverage" file="normal.antitargetcoverage.cnn" />
220 <output name="out_reference_cnn" file="reference.cnn" /> 222 <output name="out_reference_cnn" file="reference.cnn" ftype="tabular" compare="sim_size">
223 <assert_contents><has_size value="3000" delta="2000" /></assert_contents>
224 </output>
221 <output name="out_capture_target"> 225 <output name="out_capture_target">
222 <assert_contents><has_text_matching expression="chrM"/></assert_contents> 226 <assert_contents><has_text_matching expression="chrM"/></assert_contents>
223 </output> 227 </output>
224 <output name="out_sample_scatter_png" file="tumor-scatter.png" ftype="png" compare="sim_size"> 228 <output name="out_sample_scatter_png" file="tumor-scatter.png" ftype="png" compare="sim_size">
225 <assert_contents><has_size value="13000" delta="3000" /></assert_contents> 229 <assert_contents><has_size value="13000" delta="3000" /></assert_contents>