Mercurial > repos > iuc > cnvkit_breaks

comparison breaks.xml @ 2:384fa596e5d9 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit commit 9d922676808c5f57e9c01b148eec6cc0a63c53e5
author iuc
date Fri, 13 Dec 2024 23:58:43 +0000
parents ef9a50eb20ce
children d889cf77ec0d
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1:5a2cb67ef742 2:384fa596e5d9
21 <param name="input_filename_file" type="data" format="tabular" label="Bin-Level log2 Ratios/Coverages cnr file" help="The output of the CNVkit fix" /> 21 <param name="input_filename_file" type="data" format="tabular" label="Bin-Level log2 Ratios/Coverages cnr file" help="The output of the CNVkit fix" />
22 <param name="input_segment_file" type="data" format="tabular" label="CN segmentation calls cnn file" help="The output of the CNVkit segment" /> 22 <param name="input_segment_file" type="data" format="tabular" label="CN segmentation calls cnn file" help="The output of the CNVkit segment" />
23 <param argument="--min-probes" optional="true" type="integer" label="Minimum propes" value="1" help="Minimum number of covered probes to label a gene" /> 23 <param argument="--min-probes" optional="true" type="integer" label="Minimum propes" value="1" help="Minimum number of covered probes to label a gene" />
24 </inputs> 24 </inputs>
25 <outputs> 25 <outputs>
26 <data name="gene_breaks" format="text" label="${tool.name} on ${on_string}:genes with copy number breakpoints" from_work_dir="gene-breaks.txt" /> 26 <data name="gene_breaks" format="txt" label="${tool.name} on ${on_string}:genes with copy number breakpoints" from_work_dir="gene-breaks.txt" />
27 </outputs> 27 </outputs>
28 <tests> 28 <tests>
29 <test expect_num_outputs="1"> 29 <test expect_num_outputs="1">
30 <param name="input_filename_file" ftype="tabular" value="sample.cnr" /> 30 <param name="input_filename_file" ftype="tabular" value="sample.cnr" />
31 <param name="input_segment_file" ftype="tabular" value="sample.cns" /> 31 <param name="input_segment_file" ftype="tabular" value="sample.cns" />