Mercurial > repos > iuc > cnvkit_coverage

comparison coverage.xml @ 1:5602cbf1153b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit commit e927b17a345b18c1b51dc1b112db5129278dcd22
author iuc
date Fri, 29 Sep 2023 15:41:04 +0000
parents 283ab3112eea
children 9410f163f2e7
comparison
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0:283ab3112eea 1:5602cbf1153b
2 <description>Calculate coverage in the given regions from BAM read depths</description> 2 <description>Calculate coverage in the given regions from BAM read depths</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="xrefs"/> 6 <expand macro="xrefs"/>
7 <expand macro="creators"/>
7 <expand macro="requirements"/> 8 <expand macro="requirements"/>
8 <command detect_errors="exit_code"><![CDATA[ 9 <command detect_errors="exit_code"><![CDATA[
9 ln -s '$input_bam_file' ./tumor.bam && 10 ln -s '$input_bam_file' ./tumor.bam &&
10 ln -s '$input_interval_bed' ./capture.split.bed && 11 ln -s '$input_interval_bed' ./capture.split.bed &&
11 #if $reference_source.fasta 12 #if $reference_source.fasta