--- a/reference.xml	Sun May 14 21:26:06 2023 +0000
+++ b/reference.xml	Fri Sep 29 15:41:46 2023 +0000
@@ -4,6 +4,7 @@
         <import>macros.xml</import>
     </macros>
     <expand macro="xrefs"/>
+    <expand macro="creators"/>
     <expand macro="requirements"/>
     <command detect_errors="exit_code"><![CDATA[  
         #import re
@@ -12,7 +13,7 @@
             #set $x=1
             #for $x, $input in enumerate($CNV_reference.input_cnn_file):
                 #set $name_base = re.sub('[^\w\-_\.]', '_', $input.element_identifier)
-                #set $name = $name_base + '_' + str(x)
+                #set $name = $name_base
                 #silent $names.append( $name )
                 ln -s '$input' ${name}.cnn  &&
             #end for
@@ -80,7 +81,7 @@
                 </section>
             </when>
             <when value="yes">
-                <param name="input_cnn_file" type="data" format="tabular" multiple="true" label="cnn file" help="Normal-sample target or antitarget cnn files, or the directory that contains them" />
+                <param name="input_cnn_file" type="data" format="tabular" multiple="true" label="Sample Target/antitarget Coverage cnn file" help="" />
                 <section name="advanced_settings" title="Advanced settings" expanded="false">
                     <expand macro="reference_interface" />
                     <expand macro="reference_optional" />
@@ -122,7 +123,7 @@
                 <param name="fasta" value="test_buildid"/>
             </conditional>
             <param name="CNV_reference_availabel" value="yes" />
-            <param name="input_cnn_file" ftype="tabular" value="tumor.targetcoverage.cnn,sample.targetcoverage.cnn" />
+            <param name="input_cnn_file" ftype="tabular" value="tumor.targetcoverage.cnn,test.targetcoverage.cnn" />
             <param name="no_gc" value="1" />
             <output name="out_referene_tas">
                 <assert_contents><has_text text="chromosome"/></assert_contents>
@@ -146,7 +147,7 @@
                 <param name="fasta" value="test_buildid"/>
             </conditional>
             <conditional name="Sample_sex">
-                <param name="sex" value="yes" />
+                <param name="sex" value="no" />
             </conditional>
             <param name="CNV_reference_availabel" value="no" />
             <param name="targets" ftype="bed" value="capture.target.bed" />