Mercurial > repos > iuc > cnvkit_scatter

comparison scatter.xml @ 3:02446206f574 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit commit 9d922676808c5f57e9c01b148eec6cc0a63c53e5
author iuc
date Fri, 13 Dec 2024 23:59:03 +0000
parents 3323a7867128
children
comparison
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2:76f9a071da54 3:02446206f574
87 <data name="out_scatter_file" format="pdf" label="${tool.name} on ${on_string}: Sample Scatter pdf file" from_work_dir="sample-scatter.pdf" /> 87 <data name="out_scatter_file" format="pdf" label="${tool.name} on ${on_string}: Sample Scatter pdf file" from_work_dir="sample-scatter.pdf" />
88 </outputs> 88 </outputs>
89 <tests> 89 <tests>
90 <test expect_num_outputs="1"> 90 <test expect_num_outputs="1">
91 <param name="input_cnr_file" ftype="tabular" value="tumor.cnr" /> 91 <param name="input_cnr_file" ftype="tabular" value="tumor.cnr" />
92 <param name="zygosity_freq" value="0.25" /> 92 <section name="advanced_settings">
93 <param name="by_bin" value="1" /> 93 <section name="additional_SNP_allelic_process">
94 <param name="zygosity_freq" value="0.25" />
95 </section>
96 <section name="plot_aesthetics">
97 <param name="by_bin" value="1" />
98 </section>
99 </section>
94 <output name="out_scatter_file" file="sample-scatter.pdf" ftype="pdf" compare="sim_size"> 100 <output name="out_scatter_file" file="sample-scatter.pdf" ftype="pdf" compare="sim_size">
95 <assert_contents><has_size value="12000" delta="5000" /></assert_contents> 101 <assert_contents><has_size value="12000" delta="5000" /></assert_contents>
96 </output> 102 </output>
97 </test> 103 </test>
98 </tests> 104 </tests>