Mercurial > repos > iuc > cnvkit_scatter
view test-data/sample.cnv.vcf @ 5:64960243c9e1 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit commit fc1282ec68b346988203ead860e9b9d6a47e9efb
| author | iuc |
|---|---|
| date | Sat, 01 Mar 2025 12:04:46 +0000 |
| parents | f96c79d645b6 |
| children |
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##fileformat=VCFv4.2 ##fileDate=20250203 ##source=CNVkit v0.9.12 ##INFO=<ID=CIEND,Number=2,Type=Integer,Description="Confidence interval around END for imprecise variants"> ##INFO=<ID=CIPOS,Number=2,Type=Integer,Description="Confidence interval around POS for imprecise variants"> ##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the variant described in this record"> ##INFO=<ID=IMPRECISE,Number=0,Type=Flag,Description="Imprecise structural variation"> ##INFO=<ID=SVLEN,Number=1,Type=Integer,Description="Difference in length between REF and ALT alleles"> ##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant"> ##INFO=<ID=FOLD_CHANGE,Number=1,Type=Float,Description="Fold change"> ##INFO=<ID=FOLD_CHANGE_LOG,Number=1,Type=Float,Description="Log fold change"> ##INFO=<ID=PROBES,Number=1,Type=Integer,Description="Number of probes in CNV"> ##ALT=<ID=DEL,Description="Deletion"> ##ALT=<ID=DUP,Description="Duplication"> ##ALT=<ID=CNV,Description="Copy number variable region"> ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> ##FORMAT=<ID=GQ,Number=1,Type=Float,Description="Genotype quality"> ##FORMAT=<ID=CN,Number=1,Type=Integer,Description="Copy number genotype for imprecise events"> ##FORMAT=<ID=CNQ,Number=1,Type=Float,Description="Copy number genotype quality for imprecise events"> #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SampleID chrM 848 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=16023;SVLEN=-15175;FOLD_CHANGE=0.38153306589201086;FOLD_CHANGE_LOG=-1.39012;PROBES=54 GT:GQ 0/1:54