Mercurial > repos > iuc > cnvkit_segment

comparison segment.xml @ 3:33be231ce128 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit commit 9d922676808c5f57e9c01b148eec6cc0a63c53e5
author iuc
date Fri, 13 Dec 2024 23:57:20 +0000
parents c4a22d0fdba5
children
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2:e1b32558547b 3:33be231ce128
62 <data name="out_sample_segment" format="tabular" label="${tool.name} on ${on_string}: Sample segment" from_work_dir="sample.cns" /> 62 <data name="out_sample_segment" format="tabular" label="${tool.name} on ${on_string}: Sample segment" from_work_dir="sample.cns" />
63 </outputs> 63 </outputs>
64 <tests> 64 <tests>
65 <test expect_num_outputs="1"> 65 <test expect_num_outputs="1">
66 <param name="filename" ftype="tabular" value="tumor.cnr" /> 66 <param name="filename" ftype="tabular" value="tumor.cnr" />
67 <param name="method" value="hmm" /> 67 <section name="advanced_settings">
68 <param name="threshold" value="2" /> 68 <param name="method" value="hmm" />
69 <param name="drop_outliers" value="2" /> 69 <param name="threshold" value="2" />
70 <param name="drop_low_coverage" value="1" /> 70 <param name="drop_outliers" value="2" />
71 <param name="drop_low_coverage" value="1" />
72 </section>
71 <output name="out_sample_segment"> 73 <output name="out_sample_segment">
72 <assert_contents><has_text text="chromosome"/></assert_contents> 74 <assert_contents><has_text text="chromosome"/></assert_contents>
73 </output> 75 </output>
74 </test> 76 </test>
75 </tests> 77 </tests>