Mercurial > repos > iuc > cnvkit_segment

comparison test-data/ref-tas.cnn @ 0:9d9a8f230a2f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit commit c35b83e4b65b211377c9f616c77d7306da48a984
author iuc
date Sun, 14 May 2023 20:07:45 +0000
parents
children c4a22d0fdba5
comparison
equal deleted inserted replaced
-1:000000000000 0:9d9a8f230a2f
1 chromosome start end gene log2 depth spread
2 chrM 576 647 - 13.2947 96.2958 19.7107
3 chrM 647 1601 - 1.74063 22.022 2.58065
4 chrM 1601 1670 - 0.474375 3.10145 0.703308
5 chrM 1670 3229 - -0.147713 1.6068 0.218999
6 chrM 3229 3304 - 0 1.57333 0
7 chrM 3306 4262 - 0.0246175 1.8295 0.0364979
8 chrM 4262 4331 - -10.4357 0 15.472
9 chrM 4328 4400 - -2.11465 0.0972222 3.13518
10 chrM 4401 4469 - 0.106455 1.82353 0.157829
11 chrM 4469 5511 - 0.501029 3.54127 0.742825
12 chrM 5511 5579 - 0.394622 3.20588 0.585067
13 chrM 5586 5655 - -10.4457 0 15.4869
14 chrM 5656 5729 - 0 0 0
15 chrM 5760 5826 - 0 1.06061 0
16 chrM 5825 5891 - 0.627211 2.5303 0.929902
17 chrM 5903 7445 - 0.845795 2.01297 1.25398
18 chrM 7445 7514 - 0.118826 1.85507 0.176171
19 chrM 7517 7585 - -0.884742 0.544118 1.31172
20 chrM 7585 8269 - 0 1.85088 0
21 chrM 8294 8364 - -10.0424 0 14.8889
22 chrM 8365 8572 - -0.774496 0.623188 1.14827
23 chrM 8526 9207 - 2.12113 2.88693 3.14479
24 chrM 9206 9990 - 0 1.97194 0
25 chrM 9990 10058 - -10.5541 0 15.6474
26 chrM 10058 10404 - -0.412764 1.11272 0.611965
27 chrM 10404 10469 - -10.5842 0 15.6921
28 chrM 10469 10766 - 0 1.69024 0
29 chrM 10759 12137 - 0.227328 2.3164 0.337036
30 chrM 12137 12206 - -0.173094 1.76812 0.256628
31 chrM 12206 12265 - 0 0.152542 0
32 chrM 12265 12336 - -8.64364 0 12.8151
33 chrM 12336 14148 - 0.0642475 2.15563 0.0952533
34 chrM 14148 14673 - 0.148476 2.24762 0.220131
35 chrM 14673 14742 - 1.10758 8.5942 1.64209
36 chrM 14746 15887 - 0.490853 3.49167 0.727739
37 chrM 15887 15953 - -10.4334 0 15.4685
38 chrM 15955 16023 - 0 0 0