# HG changeset patch
# User iuc
# Date 1734134240 0
# Node ID 33be231ce128d04a2c0c2051f83e92362c016b81
# Parent  e1b32558547b3bd0c4ec004f5bf684f57914ad3b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit commit 9d922676808c5f57e9c01b148eec6cc0a63c53e5

diff -r e1b32558547b -r 33be231ce128 macros.xml
--- a/macros.xml	Mon Apr 22 17:44:27 2024 +0000
+++ b/macros.xml	Fri Dec 13 23:57:20 2024 +0000
@@ -1,5 +1,5 @@
 <macros>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
     <token name="@TOOL_VERSION@">0.9.11</token>
     <xml name="requirements">
         <requirements>
diff -r e1b32558547b -r 33be231ce128 segment.xml
--- a/segment.xml	Mon Apr 22 17:44:27 2024 +0000
+++ b/segment.xml	Fri Dec 13 23:57:20 2024 +0000
@@ -64,10 +64,12 @@
     <tests>
         <test expect_num_outputs="1">
             <param name="filename" ftype="tabular" value="tumor.cnr" />
-            <param name="method" value="hmm" />
-            <param name="threshold" value="2" />
-            <param name="drop_outliers" value="2" />
-            <param name="drop_low_coverage" value="1" />
+            <section name="advanced_settings">
+                <param name="method" value="hmm" />
+                <param name="threshold" value="2" />
+                <param name="drop_outliers" value="2" />
+                <param name="drop_low_coverage" value="1" />
+            </section>
             <output name="out_sample_segment">
                 <assert_contents><has_text text="chromosome"/></assert_contents>
             </output>