Mercurial > repos > iuc > cnvkit_target

diff test-data/tumor.cnr @ 0:0350116f0c25 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit commit c35b83e4b65b211377c9f616c77d7306da48a984
author iuc
date Sun, 14 May 2023 20:08:09 +0000
parents
children 876630eb0680
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/tumor.cnr	Sun May 14 20:08:09 2023 +0000
@@ -0,0 +1,55 @@
+chromosome	start	end	gene	depth	log2	weight
+chrM	848	1121	-	5.9011	-0.545691	0.408064
+chrM	1394	1667	-	3.78022	0.488494	0.663959
+chrM	1667	1940	-	1.80586	0.0200539	0.951602
+chrM	2212	2485	-	1.65201	-0.234816	0.863481
+chrM	2485	2758	-	4.0696	0.153636	0.124621
+chrM	2758	3031	-	0.717949	-1.35597	0.802412
+chrM	3031	3304	-	1.33333	0.385198	0.698993
+chrM	3306	3579	-	0.626374	-1.37983	0.9523
+chrM	3579	3853	-	2.30292	0.471839	0.953456
+chrM	3853	4126	-	2.74359	0.444955	0.954775
+chrM	4126	4400	-	0.748175	0.465611	0.488348
+chrM	4401	4695	-	0.94898	-0.583114	0.722949
+chrM	4695	4990	-	5.01695	1.13235	0.235104
+chrM	4990	5284	-	1.73129	0.209867	0.585461
+chrM	5284	5579	-	5.97966	1.18493	0.334994
+chrM	5586	5655	-	0	-21.0389	0.909906
+chrM	5656	5729	-	0	-19.8096	0.489546
+chrM	5760	5891	-	1.79389	0	0.933441
+chrM	5903	6171	-	2.15299	-0.0283011	0.954219
+chrM	6171	6440	-	2.02974	-0.212606	0.881048
+chrM	6440	6708	-	1.51493	-0.38297	0.954355
+chrM	6708	6977	-	2.03717	-0.317296	0.919868
+chrM	6977	7245	-	3.05597	-0.127011	0.931699
+chrM	7245	7514	-	1.24907	0.72831	0.445461
+chrM	7517	7767	-	1.944	0.680162	0.754313
+chrM	7767	8018	-	2.24701	-0.510836	0.476217
+chrM	8018	8269	-	1.00797	-0.663743	0.679122
+chrM	8365	8630	-	1.0717	0.28099	0.736364
+chrM	8630	8896	-	2.07895	-0.154606	0.918337
+chrM	8896	9162	-	3.66165	0.147562	0.952129
+chrM	9162	9427	-	3.60755	0.937798	0.763689
+chrM	9693	9959	-	2.07143	0.459741	0.807601
+chrM	9959	10224	-	0.00377358	-8.75948	0.810371
+chrM	10224	10490	-	1.44361	0.509209	0.934515
+chrM	10490	10756	-	1.82331	0.0655732	0.839154
+chrM	10756	11022	-	1.12406	0.238204	0.822297
+chrM	11022	11287	-	4.27925	1.20043	0.953885
+chrM	11287	11553	-	2.93609	0.224804	0.945234
+chrM	11553	11819	-	1.06015	-1.50066	0.954184
+chrM	11819	12084	-	2.40377	0.0920864	0.791533
+chrM	12084	12350	-	0.736842	-1.15941	0.633433
+chrM	12350	12616	-	0.736842	-1.25242	0.954184
+chrM	12616	12882	-	2.48872	-0.187246	0.898846
+chrM	12882	13147	-	4.50943	0.419127	0.915456
+chrM	13147	13413	-	1.47368	-0.730007	0.952782
+chrM	13413	13679	-	2.95865	-0.0213761	0.95418
+chrM	13944	14210	-	0.890977	-0.337011	0.755369
+chrM	14210	14476	-	2.21053	-0.0427224	0.83652
+chrM	14746	14987	-	8.14523	0.722701	0.582259
+chrM	14987	15228	-	2.48133	-0.105067	0.78567
+chrM	15228	15470	-	1.11157	-0.96567	0.951837
+chrM	15470	15711	-	3.9751	0.576278	0.951583
+chrM	15711	15953	-	0.809917	-1.38778	0.949491
+chrM	15955	16023	-	0	-21.1972	0.909384