diff codeml.xml @ 3:b2b8e75a962d draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/codeml commit d187c613bdb8999bfaf46f2da6e6400e9012728b"
author iuc
date Wed, 16 Sep 2020 16:46:06 +0000
parents 66228e9c29d9
children f9cb3a4339c2
line wrap: on
line diff
--- a/codeml.xml	Thu Dec 26 05:34:15 2019 -0500
+++ b/codeml.xml	Wed Sep 16 16:46:06 2020 +0000
@@ -271,7 +271,12 @@
             <output name="2ngdn" value="1_2ngdn" />
             <output name="2ngds" value="1_2ngds" />
             <output name="2ngt" value="1_2ngt" />
-            <output name="run" value="1_run_codeml" lines_diff="20"/>
+            <output name="run">
+                <assert_contents>
+                    <has_text text="CODONML (in paml version 4.9, March 2015)"/>
+                    <has_text text="Time used:" />
+                </assert_contents>
+            </output>
             <output name="ctl" value="1_codeml.ctl" lines_diff="4" />
         </test>
         <test>
@@ -287,7 +292,12 @@
             <output name="2ngdn" value="2_2ngdn" />
             <output name="2ngds" value="2_2ngds" />
             <output name="2ngt" value="2_2ngt" />
-            <output name="run" value="2_run_codeml" lines_diff="20" />
+            <output name="run">
+                <assert_contents>
+                    <has_text text="CODONML (in paml version 4.9, March 2015)"/>
+                    <has_text text="Time used:" />
+                </assert_contents>
+            </output>
             <output name="ctl" value="2_codeml.ctl" lines_diff="4" />
         </test>
         <test>
@@ -303,7 +313,12 @@
             <output name="2ngdn" value="3_2ngdn" />
             <output name="2ngds" value="3_2ngds" />
             <output name="2ngt" value="3_2ngt" />
-            <output name="run" value="3_run_codeml" lines_diff="20"/>
+            <output name="run">
+                <assert_contents>
+                    <has_text text="CODONML (in paml version 4.9, March 2015)"/>
+                    <has_text text="Time used:" />
+                </assert_contents>
+            </output>
             <output name="ctl" value="3_codeml.ctl" lines_diff="4" />
         </test>
     </tests>