Mercurial > repos > iuc > colibread_commet

comparison test-data/discosnp/vcf_file_paired.vcf @ 0:10e0e74c83af draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit a213833526146246d277ec7851165971449b501e
author iuc
date Fri, 20 Oct 2017 03:14:44 -0400
parents
children 291753bf4013
comparison
equal deleted inserted replaced
-1:000000000000 0:10e0e74c83af
1 ##fileformat=VCFv4.1
2 ##filedate=2017102
3 ##source=VCF_creator
4 ##SAMPLE=file://discoRes_k_31_c_auto_D_0_P_1_b_0_coherentBWA_MEM.sam
5 ##REF=<ID=REF,Number=1,Type=String,Description="Allele of the path Disco aligned with the least mismatches">
6 ##FILTER=<ID=MULTIPLE,Description="Mapping type : PASS or MULTIPLE or .">
7 ##INFO=<ID=Ty,Number=1,Type=String,Description="SNP, INS, DEL or .">
8 ##INFO=<ID=Rk,Number=1,Type=Float,Description="SNP rank">
9 ##INFO=<ID=UL,Number=1,Type=Integer,Description="length of the unitig left">
10 ##INFO=<ID=UR,Number=1,Type=Integer,Description="length of the unitig right">
11 ##INFO=<ID=CL,Number=1,Type=Integer,Description="length of the contig left">
12 ##INFO=<ID=CR,Number=1,Type=Integer,Description="length of the contig right">
13 ##INFO=<ID=Genome,Number=1,Type=String,Description="Allele of the reference;for indel reference is . ">
14 ##INFO=<ID=Sd,Number=1,Type=Integer,Description="Reverse (-1) or Forward (1) Alignement">
15 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
16 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Cumulated depth accross samples (sum)">
17 ##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Phred-scaled Genotype Likelihoods">
18 ##FORMAT=<ID=AD,Number=2,Type=Integer,Description="Depth of each allele by sample">
19 ##FORMAT=<ID=HQ,Number=2,Type=Integer,Description="Haplotype Quality">
20 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT G1
21 read661_contig0_position139_M0_I0_D0_NG0______er0__indel0__rgeom0_rev0 62 3 C G . MULTIPLE Ty=SNP;Rk=0;UL=.;UR=.;CL=.;CR=.;Genome=C;Sd=1 GT:DP:PL:AD:HQ 0/1:258:1927,18,1727:124,134:0,0
22 read780_contig0_position26_M0_I0_D0_NG0______er0__indel0__rgeom0_rev1 43 2 A T . MULTIPLE Ty=SNP;Rk=0;UL=.;UR=.;CL=.;CR=.;Genome=A;Sd=1 GT:DP:PL:AD:HQ 0/1:160:1260,18,1020:74,86:0,0
23 read656_contig0_position454_M0_I0_D0_NG0______er0__indel0__rgeom0_rev1 62 1 T A . MULTIPLE Ty=SNP;Rk=0;UL=.;UR=.;CL=.;CR=.;Genome=T;Sd=1 GT:DP:PL:AD:HQ 0/1:224:1628,17,1548:110,114:0,0