Mercurial > repos > iuc > colibread_commet
diff test-data/discosnp/vcf_file.vcf @ 4:8c53dc8b4adb draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit 0ed02865f048ad7471ea79509c0e23162bc29166"
| author | iuc |
|---|---|
| date | Mon, 17 Aug 2020 10:38:36 -0400 |
| parents | 291753bf4013 |
| children |
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--- a/test-data/discosnp/vcf_file.vcf Wed Jan 22 17:28:24 2020 -0500 +++ b/test-data/discosnp/vcf_file.vcf Mon Aug 17 10:38:36 2020 -0400 @@ -1,5 +1,5 @@ ##fileformat=VCFv4.1 -##filedate=2017102 +##filedate=2020814XX ##source=VCF_creator ##SAMPLE=file://discoRes_k_25_c_auto_D_0_P_1_b_0_coherent.fa ##REF=<ID=REF,Number=1,Type=String,Description="Allele of the path Disco aligned with the least mismatches"> @@ -12,13 +12,13 @@ ##INFO=<ID=CR,Number=1,Type=Integer,Description="length of the contig right"> ##INFO=<ID=Genome,Number=1,Type=String,Description="Allele of the reference;for indel reference is . "> ##INFO=<ID=Sd,Number=1,Type=Integer,Description="Reverse (-1) or Forward (1) Alignement"> -##INFO=<ID=XA,Number=0/1,Type=String,Description="Other mapping positions (chromosome_position). Position is negative in case of Reverse alignment. The position designs the starting position of the alignment, not the position of the variant itself."> +##INFO=<ID=XA,Number=.,Type=String,Description="Other mapping positions (chromosome_position). Position is negative in case of Reverse alignment. The position designs the starting position of the alignment, not the position of the variant itself."> ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Cumulated depth accross samples (sum)"> ##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Phred-scaled Genotype Likelihoods"> ##FORMAT=<ID=AD,Number=2,Type=Integer,Description="Depth of each allele by sample"> ##FORMAT=<ID=HQ,Number=2,Type=Integer,Description="Haplotype Quality"> #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT G1 G2 -SNP_higher_path_3 24 3 A T . . Ty=SNP;Rk=1;UL=.;UR=.;CL=.;CR=.;Genome=.;Sd=. GT:DP:PL:AD:HQ 0/0:74:8,227,1484:74,0:0,0 1/1:86:1724,263,8:0,86:0,0 -SNP_higher_path_2 24 2 C G . . Ty=SNP;Rk=1;UL=.;UR=.;CL=.;CR=.;Genome=.;Sd=. GT:DP:PL:AD:HQ 1/1:124:2484,378,10:0,124:0,0 0/0:134:10,408,2684:134,0:0,0 -SNP_higher_path_1 24 1 A T . . Ty=SNP;Rk=1;UL=.;UR=.;CL=.;CR=.;Genome=.;Sd=. GT:DP:PL:AD:HQ 1/1:110:2204,335,9:0,110:0,0 0/0:114:9,347,2284:114,0:0,0 +SNP_higher_path_3 116 3 A T . . Ty=SNP;Rk=1;UL=92;UR=55;CL=.;CR=.;Genome=.;Sd=. GT:DP:PL:AD:HQ 0/0:74:8,227,1484:74,0:0,0 1/1:86:1724,263,8:0,86:0,0 +SNP_higher_path_2 291 2 C G . . Ty=SNP;Rk=1;UL=267;UR=92;CL=.;CR=.;Genome=.;Sd=. GT:DP:PL:AD:HQ 1/1:124:2484,378,10:0,124:0,0 0/0:134:10,408,2684:134,0:0,0 +SNP_higher_path_1 499 1 A T . . Ty=SNP;Rk=1;UL=475;UR=267;CL=.;CR=.;Genome=.;Sd=. GT:DP:PL:AD:HQ 1/1:110:2204,335,9:0,110:0,0 0/0:114:9,347,2284:114,0:0,0