Mercurial > repos > iuc > colibread_discosnp_rad
diff test-data/discosnp/vcf_file.vcf @ 0:86b6b719e47d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit 7e976e65d4630ce8b485efd1d50a168ba98276e6
| author | iuc |
|---|---|
| date | Fri, 24 Nov 2017 12:48:46 -0500 |
| parents | |
| children | 2af5a5ca9c87 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/discosnp/vcf_file.vcf Fri Nov 24 12:48:46 2017 -0500 @@ -0,0 +1,24 @@ +##fileformat=VCFv4.1 +##filedate=2017102 +##source=VCF_creator +##SAMPLE=file://discoRes_k_25_c_auto_D_0_P_1_b_0_coherent.fa +##REF=<ID=REF,Number=1,Type=String,Description="Allele of the path Disco aligned with the least mismatches"> +##FILTER=<ID=MULTIPLE,Description="Mapping type : PASS or MULTIPLE or ."> +##INFO=<ID=Ty,Number=1,Type=String,Description="SNP, INS, DEL or ."> +##INFO=<ID=Rk,Number=1,Type=Float,Description="SNP rank"> +##INFO=<ID=UL,Number=1,Type=Integer,Description="length of the unitig left"> +##INFO=<ID=UR,Number=1,Type=Integer,Description="length of the unitig right"> +##INFO=<ID=CL,Number=1,Type=Integer,Description="length of the contig left"> +##INFO=<ID=CR,Number=1,Type=Integer,Description="length of the contig right"> +##INFO=<ID=Genome,Number=1,Type=String,Description="Allele of the reference;for indel reference is . "> +##INFO=<ID=Sd,Number=1,Type=Integer,Description="Reverse (-1) or Forward (1) Alignement"> +##INFO=<ID=XA,Number=0/1,Type=String,Description="Other mapping positions (chromosome_position). Position is negative in case of Reverse alignment. The position designs the starting position of the alignment, not the position of the variant itself."> +##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> +##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Cumulated depth accross samples (sum)"> +##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Phred-scaled Genotype Likelihoods"> +##FORMAT=<ID=AD,Number=2,Type=Integer,Description="Depth of each allele by sample"> +##FORMAT=<ID=HQ,Number=2,Type=Integer,Description="Haplotype Quality"> +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT G1 G2 +SNP_higher_path_3 24 3 A T . . Ty=SNP;Rk=1;UL=.;UR=.;CL=.;CR=.;Genome=.;Sd=. GT:DP:PL:AD:HQ 0/0:74:8,227,1484:74,0:0,0 1/1:86:1724,263,8:0,86:0,0 +SNP_higher_path_2 24 2 C G . . Ty=SNP;Rk=1;UL=.;UR=.;CL=.;CR=.;Genome=.;Sd=. GT:DP:PL:AD:HQ 1/1:124:2484,378,10:0,124:0,0 0/0:134:10,408,2684:134,0:0,0 +SNP_higher_path_1 24 1 A T . . Ty=SNP;Rk=1;UL=.;UR=.;CL=.;CR=.;Genome=.;Sd=. GT:DP:PL:AD:HQ 1/1:110:2204,335,9:0,110:0,0 0/0:114:9,347,2284:114,0:0,0